docs: fix stale molecule-monorepo references (#1837 )

Replace remaining user-facing references to the old repo name molecule-monorepo with molecule-core in clone instructions, documentation links, path examples, and source links. Affected files: - README.md (clone commands in Quick Start) - docs/quickstart.md (clone commands in one-command and manual paths) - docs/architecture/molecule-technical-doc.md (repo links) - docs/development/local-development.md (path example) - docs/infra/workspace-terminal.md (factually incorrect rename claim) - docs/integrations/opencode.md (task example) - docs/internal-content-policy.md (repo name and path references) - canvas/src/app/pricing/page.tsx (source code link) - .env.example (repo name in comment) - tools/check-template-parity.sh (path example in comment) Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-27 15:14:01 +00:00
10 changed files with 27 additions and 29 deletions
@@ -51,7 +51,7 @@ MOLECULE_ENV=development                       # Environment label (development/
 # MOLECULE_IN_DOCKER=                    # Set when running the platform inside Docker (accepts 1/0, true/false). Triggers A2A proxy to rewrite 127.0.0.1:<port> agent URLs to Docker bridge hostnames. Auto-detected via /.dockerenv; only set if detection fails or to force off.

 # GitHub
-# GITHUB_REPO=owner/repo                 # Target repo for agent initial_prompt clone (e.g. Molecule-AI/molecule-monorepo). Read inside workspace containers.
+# GITHUB_REPO=owner/repo                 # Target repo for agent initial_prompt clone (e.g. Molecule-AI/molecule-core). Read inside workspace containers.
 # GITHUB_TOKEN=                          # Personal access token / installation token used by agents that clone private repos. Register as a global secret via POST /admin/secrets for propagation to workspace env. Token is used in-URL during clone and then scrubbed from .git/config via `git remote set-url`.

 # Webhooks
@@ -49,8 +49,8 @@
 ## Quick Start

 ```bash
-git clone https://git.moleculesai.app/molecule-ai/molecule-monorepo.git
-cd molecule-monorepo
+git clone https://git.moleculesai.app/molecule-ai/molecule-core.git
+cd molecule-core
 ./scripts/dev-start.sh
 ```

@@ -41,7 +41,7 @@ export default function PricingPage() {
        <p className="mt-2 text-ink-mid">
          We publish the{" "}
          <a
-            href="https://git.moleculesai.app/molecule-ai/molecule-monorepo"
+            href="https://git.moleculesai.app/molecule-ai/molecule-core"
            className="text-accent underline hover:text-accent"
          >
            full source on GitHub
@@ -1,7 +1,7 @@
 # Molecule AI — Comprehensive Technical Documentation

 > Definitive technical reference for the Molecule AI Agent Team platform.
-> Based on a full non-invasive scan of the [molecule-monorepo](https://git.moleculesai.app/molecule-ai/molecule-monorepo) repository.
+> Based on a full non-invasive scan of the [molecule-core](https://git.moleculesai.app/molecule-ai/molecule-core) repository.

 ---

@@ -1131,11 +1131,11 @@ Molecule AI's workspace abstraction is **runtime-agnostic by design**. A workspa

 ## Links

- **GitHub**: https://git.moleculesai.app/molecule-ai/molecule-monorepo
- **Architecture Docs**: https://git.moleculesai.app/molecule-ai/molecule-monorepo/src/branch/main/docs/architecture
- **API Protocol**: https://git.moleculesai.app/molecule-ai/molecule-monorepo/src/branch/main/docs/api-protocol
- **Agent Runtime**: https://git.moleculesai.app/molecule-ai/molecule-monorepo/src/branch/main/docs/agent-runtime
- **Product Docs**: https://git.moleculesai.app/molecule-ai/molecule-monorepo/src/branch/main/docs/product
+- **GitHub**: https://git.moleculesai.app/molecule-ai/molecule-core
+- **Architecture Docs**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/architecture
+- **API Protocol**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/api-protocol
+- **Agent Runtime**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/agent-runtime
+- **Product Docs**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/product

 ---

@@ -82,7 +82,7 @@ DATABASE_URL=postgres://dev:dev@postgres:5432/molecule?sslmode=prefer
 REDIS_URL=redis://redis:6379
 PORT=8080
 SECRETS_ENCRYPTION_KEY=dev-key-change-in-production
-WORKSPACE_DIR=/path/to/molecule-monorepo   # Optional global fallback; prefer per-workspace workspace_dir in org.yaml or API
+WORKSPACE_DIR=/path/to/molecule-core   # Optional global fallback; prefer per-workspace workspace_dir in org.yaml or API
 ```

 ### Canvas (Next.js)
@@ -16,11 +16,9 @@ workspace container running on it) over an [EC2 Instance Connect
 Endpoint](https://docs.aws.amazon.com/AWSEC2/latest/UserGuide/ec2-instance-connect-setup-ec2-instance-connect-endpoint.html).
 End users see a terminal; no direct public SSH ingress is required.

-Tracking: originally `molecule-core#1528` (resolved 2026-04-22). The
-`molecule-core` repo has since been renamed to `molecule-monorepo` and no
-longer accepts new issues under the old name; future terminal work is
-tracked in `molecule-monorepo` issues (workspace-server scope) and in
-`molecule-controlplane` issues for the EIC / per-tenant SG path.
+Tracking: originally `molecule-core#1528` (resolved 2026-04-22). Future
+terminal work is tracked in `molecule-core` issues (workspace-server scope)
+and in `molecule-controlplane` issues for the EIC / per-tenant SG path.

 ## Where things are

@@ -64,7 +64,7 @@ When opencode connects to the Molecule MCP endpoint, the agent gains access to:
  "tool": "delegate_task",
  "arguments": {
    "target": "research-lead",
-    "task": "Summarise the last 7 days of commits in Molecule-AI/molecule-monorepo"
+    "task": "Summarise the last 7 days of commits in Molecule-AI/molecule-core"
  }
 }
 ```
@@ -1,6 +1,6 @@
 # Internal content policy

-The `Molecule-AI/molecule-monorepo` repo is **public**. Anything internal
+The `Molecule-AI/molecule-core` repo is **public**. Anything internal
 (positioning, competitive briefs, sales playbooks, PMM/press drip, draft
 campaigns, raw research notes, ops runbooks, retrospectives) lives in
 **`Molecule-AI/internal`**.
@@ -18,14 +18,14 @@ This page is the canonical decision tree.
 | Draft campaign asset (still iterating, not yet customer-visible) | `Molecule-AI/internal/marketing/campaigns/` |
 | Roadmap discussion, planning doc, retrospective | `Molecule-AI/internal/PLAN.md` or `Molecule-AI/internal/retrospectives/` |
 | Runbook, ops procedure, incident postmortem | `Molecule-AI/internal/runbooks/` |
-| **Public-ready** blog post (final draft, ready to ship to docs site) | `Molecule-AI/molecule-monorepo/docs/blog/` |
-| **Public-ready** tutorial / quickstart | `Molecule-AI/molecule-monorepo/docs/tutorials/` |
-| Public DevRel content (code samples, demos for users) | `Molecule-AI/molecule-monorepo/docs/devrel/` |
-| API reference, architecture docs for external developers | `Molecule-AI/molecule-monorepo/docs/api/` |
+| **Public-ready** blog post (final draft, ready to ship to docs site) | `Molecule-AI/molecule-core/docs/blog/` |
+| **Public-ready** tutorial / quickstart | `Molecule-AI/molecule-core/docs/tutorials/` |
+| Public DevRel content (code samples, demos for users) | `Molecule-AI/molecule-core/docs/devrel/` |
+| API reference, architecture docs for external developers | `Molecule-AI/molecule-core/docs/api/` |
 | Code, tests, infrastructure | wherever is appropriate inside this repo |

 **Rule of thumb:** *"Would I be comfortable if a competitor / journalist / customer
-read this verbatim today?"* — yes → `monorepo/docs/`. No / not yet → `internal/`.
+read this verbatim today?"* — yes → `molecule-core/docs/`. No / not yet → `internal/`.

 ## Why

@@ -82,7 +82,7 @@ git push -u origin HEAD
 gh pr create --base main --fill
 ```

-Yes, this is more steps than `cd molecule-monorepo && git add research/foo.md`.
+Yes, this is more steps than `cd molecule-core && git add research/foo.md`.
 That cost is intentional: the friction is the point. Public space and
 internal space are different products with different audiences and
 different durability guarantees.
@@ -17,8 +17,8 @@ This path is aligned to the current repository and current UI. It gets you from
 ## The one-command path

 ```bash
-git clone https://git.moleculesai.app/molecule-ai/molecule-monorepo.git
-cd molecule-monorepo
+git clone https://git.moleculesai.app/molecule-ai/molecule-core.git
+cd molecule-core
 ./scripts/dev-start.sh
 ```

@@ -42,8 +42,8 @@ If you'd rather run each component yourself — useful when you're iterating on
 ### Step 1: Clone the repository

 ```bash
-git clone https://git.moleculesai.app/molecule-ai/molecule-monorepo.git
-cd molecule-monorepo
+git clone https://git.moleculesai.app/molecule-ai/molecule-core.git
+cd molecule-core
 ```

 ### Step 2: Start the shared infrastructure
@@ -13,7 +13,7 @@
 #
 # Invocation (from template-hermes repo's CI):
 #
-#     bash /path/to/molecule-monorepo/tools/check-template-parity.sh \
+#     bash /path/to/molecule-core/tools/check-template-parity.sh \
 #          install.sh start.sh
 #
 # Or inline via curl: