Importable dev-team subtree for molecule-ai org templates. Extracted from molecule-ai-org-template-molecule-dev (internal#77). Atomized: each workspace owns its persona, plugins, skills, and .env. Composed via folder-tree (no !include cross-references).
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dev-lead daafb1dfbf fix(personas): sweep stale GitHub references in agent-facing prompts (Closes molecule-ai/internal#210)
GitHub org `Molecule-AI` was suspended 2026-05-06; canonical SCM is now
Gitea at git.moleculesai.app/molecule-ai. Per-agent Gitea identities are
now the default (memory: feedback_per_agent_gitea_identity_default).
Agent prompts/configs hadn't been swept yet — agents reading the brief
literally still tried `gh ...` against api.github.com (401/403) and
mis-named the SCM in PR descriptions / issue bodies.

This sweeps the per-persona system-prompts, work-cycle pick-up scripts,
and supporting persona descriptions. Mechanical patterns:

  - "GitHub issue comment, PR description"        -> "Gitea issue comment, PR description"
  - "Every GitHub comment, PR description, ..."   -> "Every Gitea comment, PR description, ..."
  - "team shares one GitHub App identity"         -> "each agent has its own Gitea persona identity"
  - "Check GitHub issues assigned to you"         -> "Check Gitea issues assigned to you"
  - "FILE A GITHUB ISSUE" / "file a GitHub issue" -> "FILE A GITEA ISSUE" / "file a Gitea issue"
  - "Molecule-AI GitHub org"                      -> "molecule-ai Gitea org"
  - "GitHub Actions CI"                           -> "Gitea Actions CI"
  - "Molecule-AI/<repo>"                          -> "molecule-ai/<repo>" (Gitea path-shape)
  - "GitHub links"                                -> "Gitea links"

Out of scope (intentionally untouched):
  - SHARED_RULES.md — already documents the post-2026-05-06 migration
  - SECRETS_MATRIX.md — historical "GitHub Apps" backlog reference (#7)
  - README.md — repo-layout doc references `.github/workflows/` directory
    name on the standard CI lib (kept for accuracy until the .github ->
    .gitea rename lands org-wide; see internal/runbooks/gitea-actions-
    migration-checklist.md §A)
  - dev-lead/triage-operator/handoff-notes.md — historical incident notes
  - .molecule-ci/scripts/*.py — uses GITHUB_WORKSPACE env (gitea-actions
    runner exposes it via GITHUB_* compatibility shims)
  - Local filesystem paths under ~/.claude/projects/-Users-hongming-
    Documents-GitHub-* — actual on-disk session memory paths
  - "Stripe/GitHub webhook signatures" reference in cp-security — talks
    about external GitHub webhook verification, not our SCM

72 files changed, 151 insertions, 151 deletions.

Tier: low (docs/config-only, no code path).
2026-05-09 22:04:35 -07:00
.github/workflows atomize(dev-tree): nest sub-teams + leaf workspaces under dev-lead/, dissolve teams/ 2026-05-08 04:08:22 -07:00
.molecule-ci/scripts cleanup: local-e2e-setup.sh — symlink injection optional via --with-symlink 2026-05-08 05:35:25 -07:00
dev-lead fix(personas): sweep stale GitHub references in agent-facing prompts (Closes molecule-ai/internal#210) 2026-05-09 22:04:35 -07:00
.gitattributes scaffold(0001): validator + CI gate + dev-department.yaml manifest 2026-05-07 20:48:16 -07:00
.gitignore scaffold(0001): validator + CI gate + dev-department.yaml manifest 2026-05-07 20:48:16 -07:00
dev-department.yaml atomize(dev-tree): nest sub-teams + leaf workspaces under dev-lead/, dissolve teams/ 2026-05-08 04:08:22 -07:00
LICENSE Initial commit 2026-05-08 03:35:37 +00:00
README.md scaffold(0001): validator + CI gate + dev-department.yaml manifest 2026-05-07 20:48:16 -07:00
SECRETS_MATRIX.md fix(personas): migrate gh CLI → tea (Gitea CLI) + curl-via-API (#45) 2026-05-07 02:54:35 -07:00
SHARED_RULES.md feat(team): comprehensive PR-gate + 100% coverage + e2e + identity-tag mechanics 2026-05-08 23:47:28 -07:00

molecule-ai/molecule-dev-department

Importable engineering-tree subtree for Molecule AI org templates.

This repo is not a standalone org template. It is designed to be grafted into a parent template (e.g. molecule-ai-org-template-molecule-dev) via filesystem symlink at deploy time. The parent template owns the org identity, top-level workspaces (PM, Marketing, Research, …), and imports this repo's dev-lead/ subtree as its engineering org.

Why a separate repo

molecule-ai-org-template-molecule-dev had grown to ~60 workspace folders + 11 teams/*.yaml composition files + 17 orphaned folders that no !include chain reached. The orphan accumulation was a sign the structure had outgrown a single repo.

Splitting the dev tree out:

  • Atomizes engineering as a self-contained unit that other org templates can reuse (one link to add the whole department).
  • Makes orphan accumulation impossible — the validator (CI gate) walks the manifest → roots → children and fails on any folder not reachable.
  • Lets the dev tree evolve on its own cadence without churning the parent template.
  • Keeps the parent template's structure focused on org identity (PM, Marketing, Research) and removes the ~50% of mass that's dev-specific.

Full design rationale: internal#77 RFC

Subtree contract

This repo is consumed by parent templates via this convention:

  1. Operator-side deploy layout clones both repos as siblings under /org-templates/:

    /org-templates/
      molecule-ai-org-template-molecule-dev/   ← parent template
      molecule-dev-department/                 ← THIS repo
    
  2. Parent template has a relative directory symlink at its root (or under teams/):

    parent-template/
      org.yaml
      dev → ../molecule-dev-department/        ← symlink
    
  3. Parent's org.yaml imports the subtree:

    workspaces:
      - !include teams/pm.yaml
      - !include teams/marketing.yaml
      - !include dev/dev-lead/workspace.yaml   ← into the symlinked subtree
    
  4. Workspace files_dir: paths inside this repo use the symlink prefix (dev/<workspace-name>) so they resolve correctly when the subtree is imported via the parent. This means the subtree is not directly importable as a standalone org template — by design.

The platform's org importer (workspace-server/internal/handlers/org_include.go) follows symlinks at the OS layer (os.ReadFile is symlink-aware) while its security check (filepath.Abs / filepath.Rel) operates on path strings (passes for symlinked paths because the link's path is inside the parent root). The contract is pinned by tests in molecule-core PR #102.

Repo layout

.
├── dev-department.yaml         ← manifest: defaults + category_routing + roots
├── .molecule-ci/scripts/
│   └── validate-tree.py        ← orphan / reachability lint (CI gate)
├── .github/workflows/
│   └── validate.yml            ← runs validate-tree.py on every PR
├── README.md                   ← this file
├── LICENSE                     ← MIT
└── <workspace-folders>         ← scaffolded empty; populated by Phase 3c-2

After Phase 3c-2 (extract dev tree with git history) the repo will contain the dev-lead/ workspace tree with nested sub-teams. After Phase 3c-3 (move documentation-specialist + triage-operator into the tree per Hongming Q1+Q2) those workspaces will live under dev-lead/app-docs/documentation-specialist/ and dev-lead/triage-operator/ respectively.

Validating locally

.molecule-ci/scripts/validate-tree.py
# OK — tree is clean

# Or with explicit manifest:
.molecule-ci/scripts/validate-tree.py dev-department.yaml

The validator:

  • Walks dev-department.yaml → roots → children recursively, including through !include directives.
  • Lists every directory containing workspace.yaml.
  • Reports orphans (filesystem dirs not reachable from manifest), cross-tree .. traversal in children: paths, duplicate parents, and missing workspace.yaml.
  • Exits non-zero on any violation.

CI runs the same script via .github/workflows/validate.yml on every push and PR — orphan accumulation is caught at PR time, not at deploy time.

Phase status

Phase Status Where
1 — Investigate platform org importer ✓ done internal#77 comment 1886
2 — Design (SSOT, alternatives, security, versioning) ✓ done internal#77
3a — Platform external: ref support parked (deferred) task #222
3b — Validator + CI gate ✓ done this commit
3c-1 — Scaffold this repo ✓ done this commit
3c-2 — Extract dev tree with history pending task #224
3c-3 — Atomize structure + move doc-spec + triage-op pending task #224
3d — Slim parent template + wire symlink + delete orphans pending task #225
4 — End-to-end verify on staging pending task #226

Refs

  • internal#77 — extraction RFC
  • molecule-core#102 — symlink-resolution test
  • Hongming GO 2026-05-08 ("you own this feature and repos, start")

License

MIT — see LICENSE