molecule-core/docs/agent-runtime/config-format.md
Hongming Wang 24fec62d7f initial commit — Molecule AI platform
Forked clean from public hackathon repo (Starfire-AgentTeam, BSL 1.1)
with full rebrand to Molecule AI under github.com/Molecule-AI/molecule-monorepo.

Brand: Starfire → Molecule AI.
Slug: starfire / agent-molecule → molecule.
Env vars: STARFIRE_* → MOLECULE_*.
Go module: github.com/agent-molecule/platform → github.com/Molecule-AI/molecule-monorepo/platform.
Python packages: starfire_plugin → molecule_plugin, starfire_agent → molecule_agent.
DB: agentmolecule → molecule.

History truncated; see public repo for prior commits and contributor
attribution. Verified green: go test -race ./... (platform), pytest
(workspace-template 1129 + sdk 132), vitest (canvas 352), build (mcp).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 11:55:37 -07:00

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# Config Format (config.yaml)
Each workspace type has a `config.yaml` that defines its personality — the model, skills, tools, and settings.
## Full Example
```yaml
# workspace-configs-templates/seo-agent/config.yaml
name: Vancouver SEO Agent
description: Bilingual EN/ZH SEO page builder for Vancouver renovation companies
version: 1.0.0
tier: 1
# AI model -- any LangChain-compatible provider string
model: anthropic:claude-sonnet-4-6
# Prompt files loaded in order into the system prompt.
# Supports any agent framework's file structure.
# Default (if omitted): system-prompt.md
prompt_files:
- system-prompt.md
# OpenClaw example:
# prompt_files: [SOUL.md, BOOTSTRAP.md, AGENTS.md, HEARTBEAT.md, TOOLS.md, USER.md, MEMORY.md]
# Claude Code example:
# prompt_files: [CLAUDE.md]
# AGENTS.md-style example:
# prompt_files: [AGENTS.md]
# Files to share with direct children (1-level inheritance)
# Children fetch these at startup via GET /workspaces/:id/shared-context
shared_context:
- architecture.md
- conventions.md
# Skills to load -- folder names under skills/
skills:
- generate-seo-page
- audit-seo-page
- keyword-research
- monitor-rankings
# Built-in tools from workspace-template (not skill-specific)
tools:
- web_search
- filesystem
- browser # only valid for tier 2+
- computer # only valid for tier 3+
# Initial prompt -- auto-sent as first A2A message on startup (first boot only).
# Runs once, then writes .initial_prompt_done marker to prevent re-execution on restart.
# Supports inline string or file reference (initial_prompt_file: init.md)
# IMPORTANT: Do NOT send A2A messages (delegate_task, etc.) in initial_prompt —
# other agents may not be ready yet. Keep it local: clone, read, commit_memory, wait.
initial_prompt: |
Clone the repo and read CLAUDE.md before doing anything else.
Save key facts to commit_memory. Wait for tasks from your parent.
# Memory backend
memory:
backend: filesystem # filesystem | langgraph_store | s3
path: /memory # where to store (relative inside container)
# A2A server config
a2a:
port: 8000
streaming: true
push_notifications: true
# Delegation defaults (override per-call in the tool)
delegation:
retry_attempts: 3
retry_delay: 5 # seconds, multiplied per attempt (backoff)
timeout: 120 # seconds before treating as crashed
escalate: true # return failure to LLM on exhaustion
# Code sandbox config (tier 3+ only)
# Three backends are available — choose based on your deployment:
#
# subprocess — local process, no isolation (dev/trusted envs only)
# docker — Docker-in-Docker throwaway container (on-prem, default for tier 3)
# e2b — E2B cloud microVM (hosted/cloud deployments, no Docker needed)
#
# For the e2b backend, add E2B_API_KEY as a workspace secret.
# Obtain a key at https://e2b.dev
sandbox:
backend: docker # subprocess | docker | e2b
memory_limit: 256m # Docker/E2B memory cap per execution
timeout: 30 # seconds before the sandbox is killed
# Sub-workspaces -- empty = single agent, populated = team
# Each entry references another config in workspace-configs-templates/
sub_workspaces: []
# sub_workspaces:
# - config: developer-frontend
# - config: developer-backend
# - config: qa-pm
# Environment variables this workspace needs
# Values are never stored here -- injected at provision time
# This just declares what keys are required
env:
required:
- ANTHROPIC_API_KEY
optional:
- AWARENESS_URL
- AWARENESS_NAMESPACE
- ANTHROPIC_BASE_URL
- OPENAI_BASE_URL
- GSC_CLIENT_ID
- GSC_CLIENT_SECRET
- NEON_DATABASE_URL
```
## Field Reference
| Field | Required | Description |
|-------|----------|-------------|
| `name` | Yes | Display name for the workspace |
| `description` | Yes | What this workspace does |
| `version` | Yes | Semantic version |
| `tier` | Yes | 1-4, determines deployment method |
| `runtime` | No | Adapter to use: `langgraph` (default), `claude-code`, `crewai`, `autogen`, `deepagents`, `openclaw`. See [Agent Runtime Adapters](./cli-runtime.md). |
| `model` | Yes | LangChain-compatible provider string (e.g. `anthropic:claude-sonnet-4-6`). Overridden by `MODEL_PROVIDER` env var if set. |
| `prompt_files` | No | Ordered list of markdown files to load as system prompt. Defaults to `["system-prompt.md"]` if omitted. `MEMORY.md` and `USER.md` are auto-appended when present so frozen memory snapshots do not need to be duplicated here. Supports any agent framework's file structure (OpenClaw, Claude Code, etc.) |
| `shared_context` | No | Files from this workspace's config dir to share with direct children. Children fetch these at startup and inject into their system prompt as `## Parent Context`. 1-level inheritance only (grandchildren don't see grandparent's context). |
| `skills` | Yes | List of skill folder names to load from `skills/` |
| `tools` | No | Built-in tools from workspace-template |
| `memory` | No | Memory backend config (defaults to filesystem) |
| `a2a` | No | A2A server settings (defaults to port 8000, streaming on) |
| `sub_workspaces` | No | Sub-workspace configs for team expansion |
| `delegation` | No | Delegation retry/timeout/escalation defaults (see [Delegation Failure Handling](./workspace-runtime.md#delegation-failure-handling)) |
| `sandbox` | No | Code sandbox config for tier 3+ (see [Code Sandbox](../development/code-sandbox.md)) |
| `env.required` | No | Environment variable keys that must be present at startup |
| `env.optional` | No | Environment variable keys that are used if present |
## Config Save Behavior (Canvas UI)
The Config tab in the Canvas UI provides two save options:
- **Save & Restart** — writes `config.yaml` to the workspace volume and immediately restarts the container. All changes take effect.
- **Save** — writes `config.yaml` only, sets a "Restart to apply changes" banner on the workspace card. Useful for batching multiple changes before restarting.
**Secrets** (API keys, env vars) saved via the Config tab auto-restart the workspace on the platform side — no manual restart needed.
## Hot-Reload Behavior
The file watcher monitors the entire config directory. When `config.yaml` changes at runtime, different fields have different reload behaviors:
| Field | Hot-reloadable? | What happens |
|-------|----------------|--------------|
| `model` | Yes | Recreate deepagent with new model, no restart needed |
| `skills` | Yes | Load/unload skill files, rebuild Agent Card |
| `tools` | Yes | Reload tool registrations |
| `memory.backend` | Yes (with caveat) | Switch backend going forward; existing memory in old backend stays and is not migrated automatically |
| `tier` | **No** | Tier affects how the workspace was provisioned (Docker flags, host access level, resource limits). Requires re-provision. Change is logged as a warning and ignored at runtime. |
| `name`, `description`, `version` | Yes | Rebuild Agent Card with new metadata |
| `a2a` | **No** | Port and protocol changes require container restart |
| `delegation` | Yes | Retry/timeout defaults take effect on next delegation call |
| `shared_context` | Yes | Children fetch on next prompt rebuild; no restart needed |
| `sub_workspaces` | **No** | Team structure changes go through `POST /workspaces/:id/expand` |
See [Skills — Live Reload](./skills.md#live-reload) for the full file watcher flow.
## Tools vs Skills
- **Tools** are built-in capabilities from `workspace-template` (web search, filesystem, browser, computer)
- **Skills** are loaded from the workspace config folder and contain domain-specific instructions and MCP tools
- Some tools are tier-gated: `browser` requires tier 2+, `computer` requires tier 3+
## Sub-Workspace Config
When `sub_workspaces` is populated, the workspace becomes a team. Each entry references another config folder in `workspace-configs-templates/`:
```yaml
sub_workspaces:
- config: developer-frontend
- config: developer-backend
- config: qa-pm
```
The provisioner reads these and spins up sub-workspace containers using the referenced configs. See [Team Expansion](./team-expansion.md).
## Related Docs
- [Skills](./skills.md) — Skill package structure and interface
- [Workspace Runtime](./workspace-runtime.md) — How config is loaded at startup
- [Workspace Tiers](../architecture/workspace-tiers.md) — What each tier enables
- [Team Expansion](./team-expansion.md) — How sub_workspaces creates teams