molecule-ai-plugin-gh-identity/README.md

molecule-ai-plugin-gh-identity

Injects per-agent identity into workspace env so every gh CLI call carries agent attribution — without needing a distinct GitHub account per agent.

Problem

All agents in a Molecule fleet share one GitHub PAT. When an agent runs:

gh issue create --assignee @me ...
gh pr comment ...

@me resolves to the PAT owner (the CEO). Every issue, PR, and comment gets attributed to one person, making audit impossible and flooding that person's notifications. See molecule-core#1957.

GitHub's identity model doesn't scale the way agent fleets do: creating N machine users requires N emails + seats; creating N GitHub Apps requires N manual UI round-trips. Neither is batch-generatable.

Approach

Work around the identity model with a convention, enforced by a tiny shell wrapper and this plugin's env injection.

1. Plugin injects per-workspace env: MOLECULE_AGENT_ROLE, MOLECULE_OWNER, MOLECULE_ATTRIBUTION_BADGE.
2. The workspace base image ships a gh wrapper (/usr/local/bin/gh) that reads $MOLECULE_AGENT_ROLE and:
   • prepends an attribution block to every issue comment / pr comment / issue create --body / pr create --body
   • rewrites --assignee @me to --assignee $MOLECULE_OWNER (or strips it entirely)
   • emits an audit line to /var/log/molecule-gh.ndjson
3. A git wrapper does the same for Co-authored-by: on commits.

The wrapper script is shipped embedded in the plugin (wrapper.sh) and installed by each workspace-template's install.sh when the plugin is active. Plugin → env injection; template → file write.

What this plugin is NOT

• NOT a GitHub App installer. Existing molecule-ai-plugin-github-app-auth handles App-based auth; this plugin is additive and does not conflict.
• NOT a machine-user provisioning tool. There are no distinct GitHub identities; attribution is text-based.
• NOT a per-agent rate limiter or cost accounter (future work; see #1957 follow-ups).

Env vars injected

Name	Source	Example
MOLECULE_AGENT_ROLE	workspace metadata (role field)	PMM-Lead
MOLECULE_OWNER	plugin config (role → owner map)	HongmingWang-Rabbit
MOLECULE_ATTRIBUTION_BADGE	computed	🤖 [Agent: PMM-Lead · ws-a0689c35]
MOLECULE_GH_WRAPPER_SHA	computed	hash of wrapper.sh for version pinning

Plugin manifest (v1)

This plugin ships as a v1 plugin (matching molecule-ai-plugin-github-app-auth). Migration to plugin-architecture-v2 happens in phase 6 of that plan. The v1 shape here is intentionally structured so v2 migration is mostly a manifest rename:

• EnvMutator.MutateEnv → v2's contributions.env + hooks.env_refresh
• Role→owner map in config.yaml → v2's spec.config
• Wrapper script shipping → v2's contributions.files (new axis)

Install (v1)

Monorepo side:

manifest.json:plugins += {name: "gh-identity", repo: "Molecule-AI/molecule-ai-plugin-gh-identity", ref: "main"}
workspace-server/go.mod: require go.moleculesai.app/plugin/gh-identity
workspace-server/cmd/server/main.go: pluginloader.BuildRegistry()

Env (operator):

MOLECULE_GH_IDENTITY_CONFIG_FILE=/path/to/config.yaml

Config

# config.yaml — role → owner map (used for `@me` rewrite)
roles:
  PMM-Lead:     { owner: HongmingWang-Rabbit }
  Dev-Lead:     { owner: HongmingWang-Rabbit }
  Research-Lead:{ owner: HongmingWang-Rabbit }
  default:      { owner: HongmingWang-Rabbit }

Capabilities requested (v2 forward-compat)

When v2 enforcement lands, this plugin will declare:

• workspace:env_inject — required
• workspace:file_write:/usr/local/bin/gh — required (via template install.sh)
• audit:emit — required
• network_egress:api.github.com — required (wrapper makes API calls via real gh)

No broader capabilities. In particular: no secret access (PAT is shared and platform-managed, not in plugin scope).

Related

• molecule-core#1957 — agent identity collapse (this plugin's driver)
• molecule-core#1933 — GH_TOKEN refresh (separate concern; handled by github-app-auth plugin)
• internal product/plugin-architecture-v2.md — target arch for v2 migration