Commit Graph

1080 Commits

Author SHA1 Message Date
molecule-ai[bot]
fe3e4366a3
Merge pull request #1015 from Molecule-AI/fix/canary-verify-health-poll-1013
fix(ci): replace sleep 360 with health-check poll in canary-verify (#1013)
2026-04-20 08:47:56 -07:00
molecule-ai[bot]
692625b774
Merge pull request #1016 from Molecule-AI/fix/a11y-workspace-node
fix(a11y): WorkspaceNode font floor, contrast, focus rings
2026-04-20 08:47:53 -07:00
molecule-ai[bot]
67eb87f43b
Merge pull request #1017 from Molecule-AI/fix/rows-err-missing
fix(bundle/exporter): add rows.Err() check + MCP secret scrub
2026-04-20 08:47:49 -07:00
molecule-ai[bot]
e7b2c10c60
Merge pull request #1022 from Molecule-AI/fix/unchecked-exec-workspace-provision
fix(mcp): scrub secrets in commit_memory + MCP handler tests
2026-04-20 08:47:25 -07:00
molecule-ai[bot]
70637ff4f7
Merge pull request #1049 from Molecule-AI/feat/platform-native-hma-instructions
feat(runtime): inject HMA memory instructions at platform level (#1047)
2026-04-20 08:47:20 -07:00
Hongming Wang
df44524f6c merge main into staging for #1070 promotion
# Conflicts:
#	.gitignore
2026-04-20 08:41:58 -07:00
Hongming Wang
4e5071ffe2
Merge pull request #1067 from Molecule-AI/fix/tenant-workspace-auth
fix(workspace-server): send X-Molecule-Admin-Token on CP calls
2026-04-20 08:39:49 -07:00
molecule-ai[bot]
24a75954ff
Merge pull request #1069 from Molecule-AI/fix/github-token-refresh-1068
fix: GitHub token refresh — WorkspaceAuth path for credential helper (#1068)
2026-04-20 08:37:46 -07:00
Hongming Wang
e8943fba6c test(workspace-server): cover Stop/IsRunning/Close + auth-header + transport errors
Closes review gap: pre-PR coverage on CPProvisioner was 37%.
After this commit every exported method is exercised:

  - NewCPProvisioner            100%
  - authHeaders                  100%
  - Start                         91.7% (remainder: json.Marshal error
                                   path, unreachable with fixed-type
                                   request struct)
  - Stop                         100% (new — header + path + error)
  - IsRunning                    100% (new — 4-state matrix + auth)
  - Close                        100% (new — contract no-op)

New cases assert both auth headers (shared secret + admin_token) land
on every outbound request, transport failures surface clear errors
on Start/Stop, and IsRunning doesn't misreport on transport failure.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-20 08:37:39 -07:00
rabbitblood
d8a2855c25 fix: GitHub token refresh — add WorkspaceAuth path for credential helper (#1068)
PR #729 tightened AdminAuth to require ADMIN_TOKEN, breaking the
workspace credential helper which called /admin/github-installation-token
with a workspace bearer token. Tokens expired after 60 min with no refresh.

Fix: Add /workspaces/:id/github-installation-token under WorkspaceAuth
so any authenticated workspace can refresh its GitHub token. Keep the
admin path as backward-compatible alias.

Update molecule-git-token-helper.sh to use the workspace-scoped path
when WORKSPACE_ID is set.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 08:30:02 -07:00
Hongming Wang
3c252112e5 fix(workspace-server): send X-Molecule-Admin-Token on CP calls
controlplane #118 + #130 made /cp/workspaces/* require a per-tenant
admin_token header in addition to the platform-wide shared secret.
Without it, every workspace provision / deprovision / status call
now 401s.

ADMIN_TOKEN is already injected into the tenant container by the
controlplane's Secrets Manager bootstrap, so this is purely a
header-plumbing change — no new config required on the tenant side.

## Change

- CPProvisioner carries adminToken alongside sharedSecret
- New authHeaders method sets BOTH auth headers on every outbound
  request (old authHeader deleted — single call site was misleading
  once the semantics changed)
- Empty values on either header are no-ops so self-hosted / dev
  deployments without a real CP still work

## Tests

Renamed + expanded cp_provisioner_test cases:
- TestAuthHeaders_NoopWhenBothEmpty — self-hosted path
- TestAuthHeaders_SetsBothWhenBothProvided — prod happy path
- TestAuthHeaders_OnlyAdminTokenWhenSecretEmpty — transition window

Full workspace-server suite green.

## Rollout

Next tenant provision will ship an image with this commit merged.
Existing tenants (none in prod right now — hongming was the only
one and was purged earlier today) will auto-update via the 5-min
image-pull cron.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-20 08:17:50 -07:00
rabbitblood
d9aacb60f2 Merge branch 'staging' of https://github.com/Molecule-AI/molecule-core into staging 2026-04-20 01:15:39 -07:00
rabbitblood
612074c53a chore: gitignore org-templates/ and plugins/ entirely
These directories are cloned from their standalone repos
(molecule-ai-org-template-*, molecule-ai-plugin-*) and should
never be committed to molecule-core directly.

Removed the !/org-templates/molecule-dev/ exception that allowed
PR #1056 to land template files in the wrong repo.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 01:10:16 -07:00
rabbitblood
ec8698440f Fix test assertions to account for HMA instructions in system prompt
Mock get_hma_instructions in exact-match tests so they don't break
when HMA content is appended. Add a dedicated test for HMA inclusion.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 01:05:05 -07:00
Hongming Wang
1155718f49
Merge pull request #1056 from Molecule-AI/feat/org-template-restructure
feat(template): restructure molecule-dev org template (39 agents)
2026-04-20 01:03:03 -07:00
Hongming Wang
95181c890d
Merge pull request #1055 from Molecule-AI/feat/initial-memory-seeding-1050
feat: seed initial memories from org template config (#1050)
2026-04-20 01:03:00 -07:00
rabbitblood
8da2275c14 feat(template): restructure molecule-dev org template to 39-agent hierarchy
Comprehensive rewrite of the Molecule AI dev team org template:

- Rename agents to {team}-{role} convention (e.g., core-be, cp-lead, app-qa)
- Add 5 new team leads: Core Platform Lead, Controlplane Lead, App & Docs Lead, Infra Lead, SDK Lead
- Add new roles: Release Manager, Integration Tester, Technical Writer, Infra-SRE, Infra-Runtime-BE, SDK-Dev, Plugin-Dev
- Delete triage-operator and triage-operator-2 (leads own triage now)
- Set default model to MiniMax-M2.7, tier 3, idle_interval_seconds 900
- Update org.yaml category_routing to new agent names
- Add orchestrator-pulse schedules for all leads (*/5 cron)
- Add pick-up-work schedules for engineers (*/15 cron)
- Add qa-review schedules for QA agents (*/15 cron)
- Add security-scan schedules for security agents (*/30 cron)
- Add release-cycle and e2e-test schedules for Release Manager and Integration Tester
- Update marketing agents with web search MCP and media generation capabilities
- All schedule prompts reference Molecule-AI/internal for PLAN.md and known-issues.md
- Un-ignore org-templates/molecule-dev/ in .gitignore for version tracking

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 00:43:15 -07:00
rabbitblood
657436de3e feat: seed initial memories from org template and create payload (#1050)
Add MemorySeed model and initial_memories support at three levels:
- POST /workspaces payload: seed memories on workspace creation
- org.yaml workspace config: per-workspace initial_memories with
  defaults fallback
- org.yaml global_memories: org-wide GLOBAL scope memories seeded
  on the first root workspace during import

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 00:35:49 -07:00
rabbitblood
ae2c05d6f0 feat(runtime): inject HMA memory instructions at platform level (#1047)
Every agent now gets hierarchical memory instructions in their system
prompt automatically — no template configuration needed. Instructions
cover commit_memory (LOCAL/TEAM/GLOBAL scopes), recall_memory, and
when to use each proactively.

Follows the same pattern as A2A instructions: defined in
executor_helpers.py, injected by _build_system_prompt() in the
claude_sdk_executor.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-20 00:22:47 -07:00
Hongming Wang
1f3727a810
Merge pull request #1033 from Molecule-AI/bugfixes/platform-handler-fixes
fix: platform handler bug fixes (a2a proxy, secrets, terminal, webhooks)
2026-04-19 22:24:39 -07:00
Hongming Wang
b5b955c4c1
Merge pull request #1031 from Molecule-AI/fix/remove-baked-oauth-token-1028
fix: remove hardcoded CLAUDE_CODE_OAUTH_TOKEN from provisioner (#1028)
2026-04-19 22:24:36 -07:00
Hongming Wang
85588cfddf
Merge pull request #1030 from Molecule-AI/fix/1027-disable-schedules-on-workspace-delete
fix: disable schedules on workspace delete (#1027)
2026-04-19 22:24:33 -07:00
Molecule AI Platform Engineer
87778c5c1b fix: multiple platform handler bug fixes
- secrets.go: Log RowsAffected errors instead of silently discarding them
- a2a_proxy.go: Add 60s safety timeout to a2aClient HTTP client
- terminal.go: Fix defer ordering - always close WebSocket conn on error,
  only defer resp.Close() after successful exec attach
- webhooks.go: Add shortSHA() helper to safely handle empty HeadSHA

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-20 05:01:01 +00:00
rabbitblood
b58c72f52f test: add cascade schedule disable tests for #1027
- TestWorkspaceDelete_DisablesSchedules — leaf workspace delete disables its schedules
- TestWorkspaceDelete_CascadeDisablesDescendantSchedules — parent+child+grandchild cascade
- TestWorkspaceDelete_ScheduleDisableOnlyTargetsDeletedWorkspace — negative test

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 22:00:50 -07:00
rabbitblood
487b429bb5 fix: stop hardcoding CLAUDE_CODE_OAUTH_TOKEN in required_env (#1028)
The provisioner was unconditionally writing CLAUDE_CODE_OAUTH_TOKEN into
config.yaml's required_env for all claude-code workspaces.  When the
baked token expired, preflight rejected every workspace — even those
with a valid token injected via the secrets API at runtime.

Changes:
- workspace_provision.go: remove hardcoded required_env for claude-code
  and codex runtimes; tokens are injected at container start via secrets
- workspace_provision_test.go: flip assertion to reject hardcoded token

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 21:56:21 -07:00
rabbitblood
8a827b6142 fix: disable schedules when workspace is deleted (#1027)
When a workspace is deleted (status set to 'removed'), its schedules
remained enabled, causing the scheduler to keep firing cron jobs for
non-existent containers. Add a cascade disable query alongside the
existing token revocation and canvas layout cleanup.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 21:53:30 -07:00
Hongming Wang
14c36e1bbd
Merge pull request #1023 from Molecule-AI/feat/productivity-boost-event-crons-autopush
feat: event-driven crons + auto-push hook for agent productivity
2026-04-19 20:34:06 -07:00
rabbitblood
52031587e3 feat: event-driven cron triggers + auto-push hook for agent productivity
Three changes to boost agent throughput:

1. Event-driven cron triggers (webhooks.go): GitHub issues/opened events
   fire all "pick-up-work" schedules immediately. PR review/submitted
   events fire "PR review" and "security review" schedules. Uses
   next_run_at=now() so the scheduler picks them up on next tick.

2. Auto-push hook (executor_helpers.py): After every task completion,
   agents automatically push unpushed commits and open a PR targeting
   staging. Guards: only on non-protected branches with unpushed work.
   Uses /usr/local/bin/git and /usr/local/bin/gh wrappers with baked-in
   GH_TOKEN. Never crashes the agent — all errors logged and continued.

3. Integration (claude_sdk_executor.py): auto_push_hook() called in the
   _execute_locked finally block after commit_memory.

Closes productivity gap where agents wrote code but never pushed,
and where work crons only fired on timers instead of reacting to events.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 20:26:35 -07:00
Hongming Wang
6451b642a2
Merge pull request #1007 from Molecule-AI/fix/scheduler-defer-busy-969
fix(scheduler): defer cron fires when workspace busy instead of skipping (#969)
2026-04-19 20:21:16 -07:00
rabbitblood
349db97208 fix(ci): replace sleep 360 with health-check poll in canary-verify (#1013)
The canary-verify workflow blocked the self-hosted runner for a fixed
6 minutes regardless of whether canaries had already updated. This
wastes the runner slot when canaries update in 2-3 minutes.

Fix: poll each canary's /health endpoint every 30s for up to 7 min.
Exit early when all canaries report the expected SHA. Falls back to
proceeding after timeout — the smoke suite validates regardless.

Typical time saving: ~3-4 minutes per canary verify run.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 19:29:15 -07:00
Molecule AI Frontend Engineer
352a4bbc5e fix(a11y): WorkspaceNode font floor, contrast, focus rings (Cycle 10)
C1: skills badge spans text-[7px]→text-[10px]; "+N more" overflow
    text-[7px] text-zinc-500→text-[10px] text-zinc-400
C2: Team section label text-[7px] text-zinc-600→text-[10px] text-zinc-400
H4: status label text-[9px]→text-[10px]; active-tasks count
    text-[9px] text-amber-300/80→text-[10px] text-amber-300 (remove opacity
    modifier per design-system contrast rule); current-task text
    text-[9px] text-amber-300/70→text-[10px] text-amber-300
L1: add focus-visible:ring-2 focus-visible:ring-blue-500/70 to the Restart
    button (independently Tab-focusable inside role="button" wrapper) and to
    the Extract-from-team button in TeamMemberChip; TeamMemberChip
    role="button" div already has the focus ring (COVERED, no change)

762/762 tests pass · build clean

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-19 22:01:58 +00:00
Molecule AI Backend Engineer
0fd702cf69 fix(bundle/exporter): add rows.Err() after child workspace enumeration
Silent data loss on mid-cursor DB errors — partial sub-workspace
bundles returned instead of surfacing the iteration error. Adds
rows.Err() check after the SELECT id FROM workspaces query in
Export(), mirroring the pattern already used in scheduler.go
and handlers with similar recursion patterns.

Closes: R1 MISSING-ROWS-ERR findings (bundle/exporter.go)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-19 21:46:36 +00:00
Hongming Wang
cb46c97d42
Merge pull request #1012 from Molecule-AI/ci/codeql-workflow-covers-main
ci(codeql): scan main + staging via workflow (UI can't multi-branch)
2026-04-19 14:37:41 -07:00
Hongming Wang
7fbbd482fb ci(codeql): cover main + staging via workflow
GitHub's UI-configured "Code quality" scan only fires on the default
branch (staging), which leaves every staging→main promotion PR
unscanned. The "On push and pull requests to" field in the UI has no
dropdown; multi-branch scanning on private repos without GHAS isn't
available there.

Workflow file gives us the control we can't get in the UI: triggers
on push + pull_request for both branches. Runs on the same
self-hosted mac mini via [self-hosted, macos, arm64].

upload: never — GHAS isn't enabled on this repo so the SARIF upload
API 403s. Keep results locally, filter to error+warning severity,
fail the PR check on findings, publish SARIF as a workflow artifact.
Flipping upload: never → always after GHAS is enabled (if ever) is
a one-line change.

Picks up the review-flagged improvements from the earlier closed PR:
  - jq install step (brew, no assumption it's present)
  - severity filter (error+warning only, drops noisy note-level)
  - set -euo pipefail
  - SARIF glob (file name doesn't match matrix language id)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-19 14:34:04 -07:00
Hongming Wang
dd3711d1db
Merge pull request #1008 from Molecule-AI/fix/ci-canary-verify-self-hosted
fix(ci): move canary-verify to self-hosted runner
2026-04-19 11:41:11 -07:00
Hongming Wang
afc50ff7be fix(ci): move canary-verify to self-hosted runner
GitHub-hosted ubuntu-latest runs on this repo hit "recent account
payments have failed or your spending limit needs to be increased"
— same root cause as the publish + CodeQL + molecule-app workflow
moves earlier this quarter. canary-verify was the last one still on
ubuntu-latest.

Switches both jobs to [self-hosted, macos, arm64]. crane install
switched from Linux tarball to brew (matches promote-latest.yml's
install pattern + avoids /usr/local/bin write perms on the shared
mac mini).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-19 11:26:41 -07:00
Molecule AI Backend Engineer
47093ae1a6 fix(mcp): scrub secrets in commit_memory MCP tool path (#838 sibling)
PR #881 closed SAFE-T1201 (#838) on the HTTP path by wiring redactSecrets()
into MemoriesHandler.Commit — but the sibling code path on the MCP bridge
(MCPHandler.toolCommitMemory) was left with only the TODO comment. Agents
calling commit_memory via the MCP tool bridge are the PRIMARY attack vector
for #838 (confused / prompt-injected agent pipes raw tool-response text
containing plain-text credentials into agent_memories, leaking into shared
TEAM scope). The HTTP path is only exercised by canvas UI posts, so the MCP
gap was the hotter one.

Change:

  workspace-server/internal/handlers/mcp.go:725
    - TODO(#838): run _redactSecrets(content) before insert — plain-text
    - API keys from tool responses must not land in the memories table.
    + SAFE-T1201 (#838): scrub known credential patterns before persistence…
    + content, _ = redactSecrets(workspaceID, content)

Reuses redactSecrets (same package) so there's no duplicated pattern list —
a future-added pattern in memories.go automatically covers the MCP path too.

Tests added in mcp_test.go:

  - TestMCPHandler_CommitMemory_SecretInContent_IsRedactedBeforeInsert
      Exercises three patterns (env-var assignment, Bearer token, sk-…)
      and uses sqlmock's WithArgs to bind the exact REDACTED form — so a
      regression (removing the redactSecrets call) fails with arg-mismatch
      rather than silently persisting the secret.

  - TestMCPHandler_CommitMemory_CleanContent_PassesThrough
      Regression guard — benign content must NOT be altered by the redactor.

NOTE: unable to run `go test -race ./...` locally (this container has no Go
toolchain). The change is mechanical reuse of an already-shipped function in
the same package; CI must validate. The sqlmock patterns mirror the existing
TestMCPHandler_CommitMemory_LocalScope_Success test exactly.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-19 17:52:52 +00:00
rabbitblood
18024aa725 fix(scheduler): defer cron fires when workspace busy instead of skipping (#969)
Previously, the scheduler skipped cron fires entirely when a workspace
had active_tasks > 0 (#115). This caused permanent cron misses for
workspaces kept perpetually busy by the 5-min Orchestrator pulse — work
crons (pick-up-work, PR review) were skipped every fire because the
agent was always processing a delegation.

Measured impact on Dev Lead: 17 context-deadline-exceeded timeouts in
2 hours, ~30% of inter-agent messages silently dropped.

Fix: when workspace is busy, poll every 10s for up to 2 minutes waiting
for idle. If idle within the window, fire normally. If still busy after
2 min, fall back to the original skip behavior.

This is a minimal, safe change:
- No new goroutines or channels
- Same fire path once idle
- Bounded wait (2 min max, won't block the scheduler pool)
- Falls back to skip if workspace never becomes idle

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-19 08:38:14 -07:00
Hongming Wang
254b49a627
Merge pull request #1006 from Molecule-AI/feat/tos-gate-eu-notice
feat(canvas): ToS gate modal + us-east-2 data residency notice
2026-04-19 07:54:15 -07:00
Hongming Wang
156781fbfa feat(canvas): ToS gate modal + us-east-2 data residency notice
Wraps /orgs in a TermsGate that polls /cp/auth/terms-status on mount
and overlays a blocking modal when the current terms version hasn't
been accepted yet. "I agree" POSTs /cp/auth/accept-terms and dismisses
the modal; the backend records IP + UA as GDPR Art. 7 proof-of-consent.

Also adds a short data residency notice under the page header:
workspaces run in AWS us-east-2 (Ohio, US). An EU region selector is
a future lift once the infra is provisioned there.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-19 07:44:47 -07:00
Hongming Wang
f0a9c980a8
Merge pull request #1005 from Molecule-AI/feat/credits-phase-5-ui
feat(canvas): Phase 5 — credit balance pill + low-balance banner
2026-04-19 07:32:44 -07:00
Hongming Wang
858b1d70ce feat(canvas): Phase 5 — credit balance pill + low-balance banner
Adds the UI surface for the credit system to /orgs:
- CreditsPill next to each org row. Tone shifts from zinc → amber at
  10% of plan to red at zero.
- LowCreditsBanner appears under the pill for running orgs when the
  balance crosses thresholds: overage_used > 0 → "overage active",
  balance <= 0 → "out of credits, upgrade", trial tail → "trial almost
  out".
- Pure helpers extracted to lib/credits.ts so formatCredits, pillTone,
  and bannerKind are unit-tested without jsdom.

Backend List query now returns credits_balance / plan_monthly_credits
/ overage_used_credits / overage_cap_credits so no second round-trip
is needed.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-19 07:27:29 -07:00
Hongming Wang
f6dc47c7d4
Merge pull request #1004 from Molecule-AI/staging
promote: staging → main — brew cleanup fix
2026-04-19 05:56:18 -07:00
Hongming Wang
a0c7033ef1
Merge pull request #1003 from Molecule-AI/ci/promote-latest-self-hosted
ci(promote-latest): suppress brew cleanup perm-denied
2026-04-19 05:56:01 -07:00
Hongming Wang
4004c0f3cf ci(promote-latest): suppress brew cleanup that hits perm-denied on shared runner 2026-04-19 05:55:45 -07:00
Hongming Wang
09e520600a
Merge pull request #1002 from Molecule-AI/staging
promote: staging → main — self-hosted promote-latest
2026-04-19 05:54:22 -07:00
Hongming Wang
be843c2dea
Merge pull request #1001 from Molecule-AI/ci/promote-latest-self-hosted
ci(promote-latest): run on self-hosted mac mini
2026-04-19 05:53:54 -07:00
Hongming Wang
d3e43c7f94 ci(promote-latest): run on self-hosted mac mini (GH-hosted quota blocked) 2026-04-19 05:53:39 -07:00
Hongming Wang
e8d11c0835
Merge pull request #1000 from Molecule-AI/staging
promote: staging → main — promote-latest workflow + codeql self-hosted
2026-04-19 05:52:06 -07:00
Hongming Wang
400f5e7cc2
Merge pull request #999 from Molecule-AI/ci/promote-latest-workflow
ci(promote-latest): workflow_dispatch retag :staging-<sha> → :latest
2026-04-19 05:43:45 -07:00