Commit Graph

986 Commits

Author SHA1 Message Date
Hongming Wang
4e7c4ceeb3 Merge pull request #976 from Molecule-AI/feat/last-outbound-at-817
feat(platform): track last_outbound_at for silent detection (closes #817)
2026-04-19 00:30:01 -07:00
Hongming Wang
68f55c3ebc Merge pull request #974 from Molecule-AI/fix/canvas-a11y-degraded-badge
fix(canvas): degraded badge WCAG AA contrast (closes #885 p1)
2026-04-19 00:28:39 -07:00
Hongming Wang
c0233317b8 Merge pull request #968 from Molecule-AI/fix/security-memory-delimiter-npm-pin
fix(security): GLOBAL memory delimiter spoofing + pin MCP version (closes #807, #805)
2026-04-19 00:28:08 -07:00
Hongming Wang
d183f89b94 Merge pull request #964 from Molecule-AI/feat/schema-migrations-tracking
feat(db): schema_migrations tracking — run each migration only once
2026-04-19 00:27:27 -07:00
Hongming Wang
50364817ac Merge pull request #967 from Molecule-AI/chore/shadcn-init
chore(canvas): initialize shadcn/ui CLI
2026-04-19 00:27:07 -07:00
Hongming Wang
6fb8472c26 Merge pull request #966 from Molecule-AI/fix/strip-current-task-public-get
fix(security): strip current_task from public GET response (closes #955)
2026-04-19 00:26:27 -07:00
Hongming Wang
ad77b84854 Merge pull request #973 from Molecule-AI/docs/rfc2119-opencode-must-not
docs(opencode): 'should not' → 'must not' for SAFE-T1201 (closes #861)
2026-04-19 00:26:05 -07:00
Hongming Wang
6efc355f2f Merge pull request #965 from Molecule-AI/fix/crlf-cron-prompts
fix(scheduler): strip CRLF from cron prompts (closes #958)
2026-04-19 00:25:14 -07:00
Hongming Wang
f96be032a1 Merge pull request #963 from Molecule-AI/chore/turbopack-dev
chore(canvas): enable Turbopack for dev server
2026-04-19 00:24:37 -07:00
Hongming Wang
9e17c86df1 Merge pull request #971 from Molecule-AI/chore/phase35-sg-lockdown-script
feat(security): Phase 35.1 — SG lockdown script for tenant EC2
2026-04-19 00:24:11 -07:00
Hongming Wang
c3eddd7950 Merge pull request #962 from Molecule-AI/chore/secret-scanner-mol-pk
chore: add mol_pk_ and cfut_ to pre-commit secret scanner
2026-04-19 00:22:44 -07:00
Hongming Wang
4e1a513160 feat(platform): track last_outbound_at for silent-workspace detection (closes #817)
Sub of #795 (phantom-busy post-mortem). Adds last_outbound_at TIMESTAMPTZ
column to workspaces. Bumped async on every successful outbound A2A call
from a real workspace (skip canvas + system callers). Exposed in
GET /workspaces/:id response as "last_outbound_at".

PM/Dev Lead orchestrators can now detect workspaces that have gone silent
despite being online (> 2h + active cron = phantom-busy warning).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 13:04:54 -07:00
Hongming Wang
89d96e8581 fix(canvas): degraded badge WCAG AA contrast — amber-400 → amber-300 (closes #885)
amber-400 on zinc-900 is 5.4:1 (AA pass). amber-300 is 6.9:1 (AA+AAA pass)
and matches the rest of the amber usage in WorkspaceNode (currentTask,
error detail, badge chip).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 12:05:38 -07:00
Hongming Wang
df632aeab5 docs(opencode): RFC 2119 — 'should not' → 'must not' for SAFE-T1201 warning (closes #861)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 12:04:49 -07:00
Hongming Wang
510083ccc5 feat(security): Phase 35.1 — SG lockdown script for tenant EC2 instances
Restricts tenant EC2 port 8080 ingress to Cloudflare IP ranges only,
blocking direct-IP access. Supports two modes:

1. Lock to CF IPs (Worker deployment): 14 IPv4 CIDR rules
2. Close ingress entirely (Tunnel deployment): removes 0.0.0.0/0 only

Usage:
  bash scripts/lockdown-tenant-sg.sh --sg-id sg-xxxxx
  bash scripts/lockdown-tenant-sg.sh --sg-id sg-xxxxx --close-ingress
  bash scripts/lockdown-tenant-sg.sh --sg-id sg-xxxxx --dry-run

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 12:01:41 -07:00
Hongming Wang
4dfd7b969e test: GLOBAL memory delimiter spoofing escape + LOCAL scope untouched
- TestCommitMemory_GlobalScope_DelimiterSpoofingEscaped: verifies [MEMORY prefix
  is escaped to [_MEMORY before DB insert (SAFE-T1201, #807)
- TestCommitMemory_LocalScope_NoDelimiterEscape: LOCAL scope stored verbatim

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 11:54:52 -07:00
Hongming Wang
3612755590 test: verify current_task + last_sample_error + workspace_dir stripped from public GET
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 11:53:45 -07:00
Hongming Wang
ff45121a6c test: schema_migrations tracking — 4 cases (first boot, re-boot, mixed, down.sql filter)
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 11:52:27 -07:00
Hongming Wang
5be8ba4b45 fix(security): GLOBAL memory delimiter spoofing + pin MCP npm version
SAFE-T1201 (#807): Escape [MEMORY prefix in GLOBAL memory content on
write to prevent delimiter-spoofing prompt injection. Content stored
as "[_MEMORY " so it renders as text, not structure, when wrapped with
the real delimiter on read.

SAFE-T1102 (#805): Pin @molecule-ai/mcp-server@1.0.0 in .mcp.json.example.
Prevents supply-chain attacks via unpinned npx -y.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 11:09:24 -07:00
Hongming Wang
16cb728461 chore(canvas): initialize shadcn/ui — components.json + cn utility
Sets up shadcn/ui CLI so new components can be added with
`npx shadcn add <component>`. Uses new-york style, zinc base color,
no CSS variables (matches existing Tailwind-only approach).

Adds clsx + tailwind-merge for the cn() utility.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:57:17 -07:00
Hongming Wang
2563ca4ad1 fix(security): strip current_task from public GET /workspaces/:id (closes #955)
current_task exposes live agent instructions to any caller with a
valid workspace UUID. Also strips last_sample_error and workspace_dir
from the public endpoint. These fields remain available through
authenticated workspace-specific endpoints.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:48:59 -07:00
Hongming Wang
3c321536b4 fix(scheduler): strip CRLF from cron prompts on insert/update (closes #958)
Windows CRLF in org-template prompt text caused empty agent responses
and phantom-producing detection. Strips \r at the handler level before
DB persist, plus a one-time migration to clean existing rows.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:45:14 -07:00
Hongming Wang
345d3cd645 feat(db): schema_migrations tracking — migrations only run once
Adds a schema_migrations table that records which migration files
have been applied. On boot, only new migrations execute — previously
applied ones are skipped. This eliminates:

- Re-running all 33 migrations on every restart
- Risk of non-idempotent DDL failing on restart
- Unnecessary log noise from re-applying unchanged schema

First boot auto-populates the tracking table with all existing
migrations. Subsequent boots only apply new ones.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:39:20 -07:00
Hongming Wang
f6c1eb7482 chore(canvas): enable Turbopack for dev server — faster HMR
next dev --turbopack for significantly faster dev server startup
and hot module replacement. Build script unchanged (Turbopack for
next build is still experimental).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:39:03 -07:00
Hongming Wang
03bdece7b7 chore: add mol_pk_ and cfut_ to pre-commit secret scanner
Partner API keys (mol_pk_*) and Cloudflare tokens (cfut_*) now
caught by the pre-commit hook alongside sk-ant-, ghp_, AKIA.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:38:48 -07:00
Hongming Wang
04292f419c fix(ci): update working-directory for workspace-server/ and workspace/ renames
- platform-build: working-directory platform → workspace-server
- golangci-lint: working-directory platform → workspace-server
- python-lint: working-directory workspace-template → workspace
- e2e-api: working-directory platform → workspace-server
- canvas-deploy-reminder: fix duplicate if: key (merged into single condition)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:05:44 -07:00
Hongming Wang
a62ad0bd66 chore: update publish workflow name + document staging-first flow
Default branch is now staging for both molecule-core and
molecule-controlplane. PRs target staging, CEO merges staging → main
to promote to production.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 07:02:02 -07:00
Hongming Wang
43f4cb1b58 Merge pull request #953 from Molecule-AI/fix/chattab-comment-path
fix: ChatTab comment path
2026-04-18 01:49:05 -07:00
Hongming Wang
434e5747b2 fix: ChatTab comment path for workspace-server rename
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:48:59 -07:00
Hongming Wang
fb3206fda0 Merge pull request #952 from Molecule-AI/fix/workspace-script-paths
fix: workspace script path comments
2026-04-18 01:48:10 -07:00
Hongming Wang
37ed319562 fix: update workspace script comments for workspace-template → workspace rename
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:48:05 -07:00
Hongming Wang
af205e1810 Merge pull request #951 from Molecule-AI/fix/docs-architecture-paths
fix(docs): architecture + API paths for workspace-server rename
2026-04-18 01:25:32 -07:00
Hongming Wang
aaa6a4db83 fix(docs): update architecture + API reference paths for workspace-server rename
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:25:21 -07:00
Hongming Wang
9476580c56 Merge pull request #950 from Molecule-AI/fix/docs-stale-paths
fix(docs): update cd commands for workspace-server/ and workspace/ renames
2026-04-18 01:24:13 -07:00
Hongming Wang
dad3b5bd9d fix(docs): update cd commands for workspace-server/ and workspace/ renames
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:24:09 -07:00
Hongming Wang
f9ded2a4d7 Merge pull request #948 from Molecule-AI/fix/wire-verify-manifest-integrity
fix(plugins): wire VerifyManifestIntegrity into install pipeline
2026-04-18 01:15:40 -07:00
Hongming Wang
e68fffcbf5 fix(plugins): wire VerifyManifestIntegrity into install pipeline
The supply_chain.go implementation was merged in #937 but never called
from the actual install handler. Plugins with a manifest.json sha256
field now get verified before staging completes.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:15:26 -07:00
rabbitblood
525212c64d Merge branch 'main' of https://github.com/Molecule-AI/molecule-core 2026-04-18 01:08:53 -07:00
rabbitblood
8562ef8f46 fix(ci): add staging branch to CI triggers
PRs targeting staging got no CI because the workflow only triggered
on main. Now runs on both main and staging pushes + PRs.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:08:44 -07:00
Hongming Wang
eafc413a43 chore: rename publish-platform-image → publish-workspace-server-image
Aligns CI workflow filename with the platform/ → workspace-server/ rename.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 01:05:09 -07:00
Hongming Wang
f82b09cb79 chore: clean stale gitignore entries for removed dirs
Remove entries for org-templates/, plugins/, docs/.vitepress/dist/
that no longer exist. Deduplicate .claude-bridge/ entry.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 00:58:42 -07:00
Hongming Wang
0df1cdf851 Merge pull request #947 from Molecule-AI/chore/final-cleanup
chore: final cleanup — remove internal tooling, gitignore local config
2026-04-18 00:52:41 -07:00
Hongming Wang
73183d8c21 chore: final cleanup — remove internal tooling, gitignore local config
Removed:
- docs/.vitepress/ + package.json — docs site config belongs in Molecule-AI/docs
- scripts/bridge/ — internal Claude Code bridge server
- scripts/claude-code-bridge.py — internal agent bridge
- scripts/dedup_settings_hooks.py, verify_settings_hooks.py — internal maintenance

Gitignored:
- .mcp.json → .mcp.json.example (local MCP config, users create their own)
- test-results/ — ephemeral build artifacts

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 00:52:30 -07:00
Hongming Wang
2a52b618ab Merge pull request #946 from Molecule-AI/chore/move-internal-docs
chore: move internal docs to private repo
2026-04-18 00:48:03 -07:00
Hongming Wang
99571efb62 chore: move internal docs to Molecule-AI/internal (private)
Moved to private repo so the public monorepo only contains docs
useful for contributors and users:

Removed (now in Molecule-AI/internal):
- edit-history/ — 15 daily dev session logs
- retrospectives/ — session postmortems with ops details
- marketing/ — competitor analysis, SEO strategy, landing briefs
- product/ — PRD, SaaS strategy, growth research
- runbooks/ — SaaS ops (secrets rotation, GDPR, admin auth)
- security/ — internal security advisories
- research/ — competitive framework analysis
- ecosystem-watch.md — competitive landscape tracking
- demo/, spikes/ — internal prototypes
- known-issues.md, remote-workspaces-readiness.md

Also removed duplicate docs/architecture.md (superseded by
docs/architecture/overview.md).

Remaining public docs: architecture, API reference, adapters,
agent-runtime, plugins, guides, tutorials, development, frontend,
integrations, glossary, quickstart.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 00:47:41 -07:00
Hongming Wang
e231c74701 Merge pull request #945 from Molecule-AI/chore/gitignore-claude-md-add-docs
chore: gitignore CLAUDE.md, extract architecture + API docs
2026-04-18 00:44:36 -07:00
Hongming Wang
0d3c57cced chore: gitignore CLAUDE.md, extract content to proper docs
CLAUDE.md was a 44KB catch-all mixing architecture docs (useful for
everyone) with agent operating instructions (internal). Split:

- docs/architecture/overview.md — system architecture, component
  descriptions, 13 key patterns (import cycles, health detection,
  communication rules, WebSocket flow, lifecycle, etc.)
- docs/api-reference.md — full REST API route table + database schema
- CLAUDE.md → gitignored (stays local for agent tooling)

All internal PR/issue references stripped from the new docs.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 00:43:33 -07:00
Hongming Wang
c3675bd8b7 Merge pull request #944 from Molecule-AI/chore/open-source-final-fixes
chore: final open-source cleanup — binary, stale paths, private refs
2026-04-18 00:39:12 -07:00
Hongming Wang
39074cc4ae chore: final open-source cleanup — binary, stale paths, private refs
- Remove compiled workspace-server/server binary from git
- Fix .gitignore, .gitattributes, .githooks/pre-commit for renamed dirs
- Fix CI workflow path filters (workspace-template → workspace)
- Replace real EC2 IP and personal slug in test_saas_tenant.sh
- Scrub molecule-controlplane references in docs
- Fix stale workspace-template/ paths in provisioner, handlers, tests
- Clean tracked Python cache files

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-18 00:38:55 -07:00
Hongming Wang
a79dec0a86 Merge pull request #943 from Molecule-AI/fix/remaining-platform-refs
fix: last stale platform/ refs in scripts, tests, compose
2026-04-18 00:32:08 -07:00