molecule-core/scripts
claude-ceo-assistant (Claude Opus 4.7 on Hongming's MacBook) 25fb696965
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chore: reconcile main → staging post-suspension divergence
Refs Task #165 (Class D AUTO_SYNC_TOKEN plumbing).

main and staging diverged after the 2026-05-06 GitHub-org suspension
because Class D / Class G / feature work landed on staging while
unrelated CI fixes (#34-47, ECR auth-inline, buildx→docker, pre-clone
manifest deps) landed straight on main. Both branches edited the
same workflow files, so every push to main triggered an Auto-sync
run that aborted at `git merge --no-ff origin/main` with 7 content
conflicts:

  - .github/workflows/canary-verify.yml      (URL: github.com → Gitea)
  - .github/workflows/ci.yml                 (3 URL refs)
  - .github/workflows/publish-runtime.yml    (cascade: HTTP repo-dispatch
                                              → Gitea push)
  - .github/workflows/publish-workspace-server-image.yml
                                             (drop AWS-action steps;
                                              ECR auth is inline)
  - .github/workflows/retarget-main-to-staging.yml (URL)
  - manifest.json                            (lowercase org slug + add
                                              mock-bigorg from main)
  - scripts/clone-manifest.sh                (keep main's MOLECULE_GITEA_TOKEN
                                              auth path + drop awk-tolower
                                              since manifest is now lowercase)

Resolution: union — staging's post-suspension Gitea/ECR migrations win
on URL/policy edits; main's additive work (mock-bigorg manifest entry,
inline ECR auth, MOLECULE_GITEA_TOKEN basic-auth) is preserved on top.

After this lands, staging is a strict superset of main, so the next
auto-sync run on a push to main will be a clean fast-forward / no-op.
The auto-sync workflow on main also picks up staging's AUTO_SYNC_TOKEN
swap (Class D #26) for free, fixing the latent layer-2 push-auth issue.

Verified locally:
  - bash -n scripts/clone-manifest.sh
  - python -c 'yaml.safe_load(...)' on each touched workflow
  - python -c 'json.load(open(manifest.json))' (21 plugins, 9 templates,
    7 org_templates)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 14:24:37 -07:00
..
demo-freeze-snapshots ops: demo-day freeze + rollback runbook 2026-05-01 12:04:30 -07:00
ops feat(ops): add sweep-aws-secrets janitor — orphan tenant bootstrap secrets 2026-05-03 02:38:08 -07:00
build_runtime_package.py fix(post-suspension): migrate github.com/Molecule-AI refs to git.moleculesai.app (Class G #168) 2026-05-07 13:08:15 -07:00
build-images.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
bundle-compile.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
canary-smoke.sh feat(canary): smoke harness + GHA verification workflow (Phase 2) 2026-04-19 03:30:19 -07:00
check-cascade-list-vs-manifest.sh feat(ci): structural drift gate for cascade list vs manifest (RFC #388 PR-3) 2026-05-03 03:52:39 -07:00
check-stale-promote-pr.sh feat(ops): hourly alarm for auto-promote PR stuck on REVIEW_REQUIRED (#2975) 2026-05-05 17:55:27 -07:00
cleanup-rogue-workspaces.sh fix(provisioner): stop rogue config-missing restart loop (#17) 2026-04-14 07:32:58 -07:00
clone-manifest.sh chore: reconcile main → staging post-suspension divergence 2026-05-07 14:24:37 -07:00
demo-day-runbook.md ops: demo-day freeze + rollback runbook 2026-05-01 12:04:30 -07:00
demo-freeze.sh fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46) 2026-05-07 00:56:23 -07:00
demo-thaw.sh ops: demo-day freeze + rollback runbook 2026-05-01 12:04:30 -07:00
dev-start.sh fix(dev-start): detect missing Go and fall back to docker-compose platform 2026-04-29 20:04:37 -07:00
import-agent.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
lockdown-tenant-sg.sh feat(security): Phase 35.1 — SG lockdown script for tenant EC2 instances 2026-04-18 12:01:41 -07:00
measure-coordinator-task-bounds-runner.sh fix(harness-runner): switch from non-existent /heartbeat-history to /activity 2026-04-28 23:12:51 -07:00
measure-coordinator-task-bounds.sh docs: registry pattern + harness scripts READMEs 2026-04-28 22:19:40 -07:00
nuke-and-rebuild.sh fix(scripts): nuke-and-rebuild self-bootstraps templates; add E2E test 2026-04-26 14:37:04 -07:00
post-rebuild-setup.sh security: remove hardcoded API keys from post-rebuild-setup.sh 2026-04-20 13:02:52 -07:00
README.md docs(internal): bulk-sed molecule-core .md docs → Gitea (#37 final molecule-core sweep) 2026-05-07 01:27:50 -07:00
refresh-workspace-images.sh fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46) 2026-05-07 00:56:23 -07:00
rollback-latest.sh fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46) 2026-05-07 00:56:23 -07:00
test_build_runtime_package.py chore: rewriter unit tests + drop misleading noqa on import inbox 2026-04-30 20:45:32 -07:00
test-a2a-cross-runtime.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-all-adapters.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-all-runtimes-a2a-e2e.sh test(e2e): wire SaaS auth headers (TENANT_ADMIN_TOKEN + TENANT_ORG_ID) 2026-05-02 04:36:23 -07:00
test-all.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-check-stale-promote-pr.sh feat(ops): hourly alarm for auto-promote PR stuck on REVIEW_REQUIRED (#2975) 2026-05-05 17:55:27 -07:00
test-cross-agent-chat.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-hermes-plugin-e2e.sh test(e2e): unified A2A round-trip parity harness across all 4 runtimes 2026-05-02 04:36:23 -07:00
test-nuke-and-rebuild.sh fix(scripts): nuke-and-rebuild self-bootstraps templates; add E2E test 2026-04-26 14:37:04 -07:00
test-team-e2e.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
wheel_smoke.py feat(mcp): notifications/claude/channel for push-feel inbox UX 2026-04-30 20:10:01 -07:00

scripts/

Operational and one-off scripts for molecule-core. Most are self-documenting — see the header comments in each file.

RFC #2251 coordinator task-bound harnesses

There are three related scripts; pick the right one:

Script Purpose Targets
measure-coordinator-task-bounds.sh Canonical v1 harness for the RFC #2251 / Issue 4 reproduction. Provisions a PM coordinator + Researcher child via claude-code-default + langgraph templates, sends a synthesis-heavy A2A kickoff, observes elapsed time + activity trace. OSS-shape platform — localhost or any /workspaces-shaped endpoint. Has tenant/admin-token guards for non-localhost runs.
measure-coordinator-task-bounds-runner.sh Generalised runner for the same measurement contract but with arbitrary template + secret + model combinations (Hermes/MiniMax, etc.). Useful for cross-runtime variants without modifying the canonical harness. Same as above (local or SaaS via MODE=saas).
measure-coordinator-task-bounds.sh (in molecule-controlplane) Production-shape variant that bootstraps a real staging tenant via POST /cp/admin/orgs, then runs the same measurement against <slug>.staging.moleculesai.app. Staging controlplane only — refuses to run against production.

See reference_harness_pair_pattern (auto-memory) for when to use which and the cross-repo design rationale.

Common safety pattern across all three

  • Cleanup trap on EXIT/INT/TERM auto-deletes provisioned resources.
  • DRY_RUN=1 prints plan + auth fingerprint, exits before any state mutation. Run this before pointing at staging or any shared infrastructure.
  • Non-target guard refuses arbitrary endpoints (the controlplane variant is locked to staging-api.moleculesai.app; the OSS variant requires explicit auth + tenant scoping for non-localhost PLATFORM).
  • Cleanup failures emit cleanup_*_failed events with remediation hints; no silenced curl. ADMIN_TOKEN expiring mid-run surfaces as a structured event rather than a silent leak.

Activity trace caveat

If activity_trace.raw == "<endpoint_unavailable>", the per-workspace /activity endpoint isn't wired on the target build — the bound measurement is INCONCLUSIVE on the platform-ceiling question. Either wire the endpoint or replace with the equivalent Datadog query. Note that /activity accepts a since_secs query parameter; see the endpoint handler for the supported range.

Other scripts

  • cleanup-rogue-workspaces.sh — emergency teardown for leaked workspaces. Prompts for confirmation. Pair with the harnesses if a cleanup trap fails (see cleanup_*_failed events).
  • canary-smoke.sh — quick smoke test for canary releases.
  • dev-start.sh — local-dev platform bring-up.

The rest are self-documenting in their header comments.