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molecule-core/.gitea/workflows/ci-mcp-stdio-transport.yml
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fix(a2a-mcp): use readline() not read(65536) for pipe-safe stdio
a2a_mcp_server.py main()'s stdio read loop used
`await loop.run_in_executor(None, stdin.read, 65536)`. On a PIPE,
read(n) blocks until n bytes accumulate OR EOF. A live MCP client
(openclaw bundle-mcp, Claude Code, Cursor) sends one ~150-byte
newline-delimited request and keeps stdin OPEN waiting for the reply,
so neither condition is met: the server never parses `initialize` and
the client times out (~30s; openclaw: "MCP error -32000: Connection
closed"). This silently broke peer visibility for every pipe-spawned
MCP host while passing all existing stdio tests, which only fed stdin
from a regular file or a heredoc-pipe that CLOSES (EOF returns
immediately). readline() returns as soon as one newline-delimited
line is available — exactly the JSON-RPC framing — and is
backward-compatible with the EOF/file cases.

Root cause of the 2026-05-15 openclaw peer-visibility outage
(workspace 95744c11): the molecule MCP server could not complete the
handshake over openclaw's stdio pipe, so the agent fell back to
native sessions_list. The openclaw template adapter fix
(template-openclaw#16) works around this via HTTP transport; this
patch fixes the stdio root cause so stdio works for all CLI MCP hosts.

Regression coverage:
- tests/test_a2a_mcp_server.py::TestStdioKeepOpenPipe — spawns the
  real a2a_mcp_server.py, writes one request over a pipe, and
  DELIBERATELY keeps stdin open. FAILS (15s timeout, empty response)
  on read(65536); PASSES on readline(). Verified both directions.
- ci-mcp-stdio-transport.yml: new "pipe held OPEN, no EOF" step that
  reproduces the literal openclaw failure (the prior steps only
  exercised EOF-closing stdin, which is why the outage shipped green).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-15 23:43:14 -07:00

226 lines
8.7 KiB
YAML

name: MCP Stdio Transport Regression
# Regression test for molecule-ai-workspace-runtime#61:
# asyncio.connect_read_pipe / connect_write_pipe fail with
# ValueError: "Pipe transport is only for pipes, sockets and character devices"
# when stdout is a regular file (openclaw capture, CI tee, debugging).
#
# This workflow reproduces the exact failure mode and verifies the
# fallback to direct buffer I/O works. It runs on every PR that
# touches the MCP server or this workflow, plus nightly cron.
#
# Why a separate workflow (not folded into ci.yml python-lint):
# - The test needs to spawn the MCP server with stdout redirected
# to a regular file (not a TTY/pipe), which conflicts with
# pytest's own capture mechanism.
# - It exercises the actual process spawn path (python a2a_mcp_server.py)
# not just unit-test mocks — closer to the real openclaw integration.
# - A dedicated workflow surfaces stdio-specific regressions without
# coupling to the broader Python test suite's coverage gate.
on:
pull_request:
branches: [main, staging]
paths:
- 'workspace/a2a_mcp_server.py'
- 'workspace/mcp_cli.py'
- 'workspace/tests/test_a2a_mcp_server.py'
- '.gitea/workflows/ci-mcp-stdio-transport.yml'
push:
branches: [main, staging]
paths:
- 'workspace/a2a_mcp_server.py'
- 'workspace/mcp_cli.py'
- 'workspace/tests/test_a2a_mcp_server.py'
- '.gitea/workflows/ci-mcp-stdio-transport.yml'
schedule:
# Nightly at 04:00 UTC — catches drift from dependency updates
# (e.g. asyncio behavior changes in new Python patch releases).
- cron: '0 4 * * *'
concurrency:
group: mcp-stdio-${{ github.ref }}
cancel-in-progress: true
env:
GITHUB_SERVER_URL: https://git.moleculesai.app
jobs:
# bp-exempt: regression canary for runtime#61; not a merge gate — informational only until promoted to required.
# mc#774: continue-on-error mask — new workflow, flip to false once it's green on ≥3 consecutive main runs.
mcp-stdio-regular-file:
name: MCP stdio with regular-file stdout
runs-on: ubuntu-latest
continue-on-error: true # mc#774
timeout-minutes: 5
env:
WORKSPACE_ID: "00000000-0000-0000-0000-000000000001"
defaults:
run:
working-directory: workspace
steps:
- uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
- uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
with:
python-version: '3.11'
cache: pip
cache-dependency-path: workspace/requirements.txt
- run: pip install -r requirements.txt pytest pytest-asyncio pytest-cov
- name: Reproduce runtime#61 — stdout as regular file
run: |
set -euo pipefail
echo "=== Reproducing molecule-ai-workspace-runtime#61 ==="
echo ""
echo "Before the fix, this command would fail with:"
echo ' ValueError: Pipe transport is only for pipes, sockets and character devices'
echo ""
# Spawn the MCP server with stdout redirected to a regular file.
# This is exactly what openclaw does when capturing MCP output.
OUTPUT=$(mktemp)
trap 'rm -f "$OUTPUT"' EXIT
# Send initialize request, then tools/list, then exit
{
echo '{"jsonrpc":"2.0","id":1,"method":"initialize","params":{}}'
echo '{"jsonrpc":"2.0","id":2,"method":"tools/list"}'
} | python a2a_mcp_server.py > "$OUTPUT" 2>&1 || {
RC=$?
echo "FAIL: MCP server exited with code $RC"
echo "--- stdout+stderr ---"
cat "$OUTPUT"
exit 1
}
echo "PASS: MCP server handled regular-file stdout without crashing"
echo ""
echo "--- Output (first 20 lines) ---"
head -20 "$OUTPUT"
echo ""
# Verify we got valid JSON-RPC responses
if grep -q '"result"' "$OUTPUT"; then
echo "PASS: JSON-RPC responses found in output"
else
echo "FAIL: No JSON-RPC responses in output"
cat "$OUTPUT"
exit 1
fi
- name: Reproduce runtime#61 — stdin from regular file
run: |
set -euo pipefail
echo "=== stdin as regular file (CI tee / capture pattern) ==="
INPUT=$(mktemp)
OUTPUT=$(mktemp)
trap 'rm -f "$INPUT" "$OUTPUT"' EXIT
cat > "$INPUT" <<'EOF'
{"jsonrpc":"2.0","id":1,"method":"initialize","params":{}}
{"jsonrpc":"2.0","id":2,"method":"tools/list"}
EOF
python a2a_mcp_server.py < "$INPUT" > "$OUTPUT" 2>&1 || {
RC=$?
echo "FAIL: MCP server exited with code $RC"
cat "$OUTPUT"
exit 1
}
echo "PASS: MCP server handled regular-file stdin without crashing"
if grep -q '"result"' "$OUTPUT"; then
echo "PASS: JSON-RPC responses found in output"
else
echo "FAIL: No JSON-RPC responses in output"
cat "$OUTPUT"
exit 1
fi
- name: Verify warning is emitted for non-pipe stdio
run: |
set -euo pipefail
echo "=== Verify diagnostic warning ==="
OUTPUT=$(mktemp)
trap 'rm -f "$OUTPUT"' EXIT
{
echo '{"jsonrpc":"2.0","id":1,"method":"initialize","params":{}}'
} | python a2a_mcp_server.py > "$OUTPUT" 2>&1
# The warning should mention "not a pipe" for operator visibility
if grep -qi "not a pipe" "$OUTPUT"; then
echo "PASS: Diagnostic warning emitted for non-pipe stdio"
else
echo "NOTE: No warning in output (may be suppressed by log level)"
fi
- name: Reproduce openclaw failure — pipe held OPEN, no EOF
run: |
set -euo pipefail
echo "=== keep-stdin-open pipe (the real openclaw / Claude Code case) ==="
echo ""
echo "Before the readline() fix this HANGS: main() did"
echo " stdin.read(65536) -> on a pipe, blocks until 64KB OR EOF."
echo "An MCP client sends one ~150B initialize and keeps stdin"
echo "open waiting for the response, so the server never parsed"
echo "the request and the client timed out (openclaw: 'MCP error"
echo "-32000: Connection closed'). The earlier regular-file /"
echo "heredoc-pipe steps PASSED through this bug because a file"
echo "(or a closing heredoc) yields EOF immediately."
echo ""
# Drive the server through a real pipe that stays OPEN: write
# one initialize, do NOT close stdin, and require a response
# within a hard timeout. read(65536) -> no output -> timeout
# kills it -> FAIL. readline() -> immediate response -> PASS.
python - <<'PYEOF'
import json, subprocess, sys, time, select
proc = subprocess.Popen(
[sys.executable, "a2a_mcp_server.py"],
stdin=subprocess.PIPE, stdout=subprocess.PIPE,
stderr=subprocess.STDOUT,
env={**__import__("os").environ},
)
req = json.dumps({
"jsonrpc": "2.0", "id": 1, "method": "initialize",
"params": {"protocolVersion": "2024-11-05",
"capabilities": {},
"clientInfo": {"name": "keepopen", "version": "1"}},
}) + "\n"
proc.stdin.write(req.encode())
proc.stdin.flush()
# Deliberately DO NOT close proc.stdin — mirror a live MCP client.
deadline = time.time() + 15
line = b""
while time.time() < deadline:
r, _, _ = select.select([proc.stdout], [], [], 1)
if r:
line = proc.stdout.readline()
if line:
break
proc.kill()
if not line:
print("FAIL: no response within 15s on an open pipe — "
"stdin.read(65536) regression is back")
sys.exit(1)
resp = json.loads(line.decode())
assert resp.get("id") == 1 and "result" in resp, \
f"unexpected response: {line[:200]!r}"
assert resp["result"]["serverInfo"]["name"] == "molecule", \
f"wrong serverInfo: {line[:200]!r}"
print("PASS: server answered initialize on a still-open pipe")
PYEOF
- name: Run unit tests for stdio transport
run: |
set -euo pipefail
echo "=== Running stdio transport unit tests ==="
python -m pytest tests/test_a2a_mcp_server.py::TestStdioPipeAssertion tests/test_a2a_mcp_server.py::TestStdioKeepOpenPipe -v --no-cov