molecule-core/.github/workflows/publish-runtime.yml
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chore: reconcile main → staging post-suspension divergence
Refs Task #165 (Class D AUTO_SYNC_TOKEN plumbing).

main and staging diverged after the 2026-05-06 GitHub-org suspension
because Class D / Class G / feature work landed on staging while
unrelated CI fixes (#34-47, ECR auth-inline, buildx→docker, pre-clone
manifest deps) landed straight on main. Both branches edited the
same workflow files, so every push to main triggered an Auto-sync
run that aborted at `git merge --no-ff origin/main` with 7 content
conflicts:

  - .github/workflows/canary-verify.yml      (URL: github.com → Gitea)
  - .github/workflows/ci.yml                 (3 URL refs)
  - .github/workflows/publish-runtime.yml    (cascade: HTTP repo-dispatch
                                              → Gitea push)
  - .github/workflows/publish-workspace-server-image.yml
                                             (drop AWS-action steps;
                                              ECR auth is inline)
  - .github/workflows/retarget-main-to-staging.yml (URL)
  - manifest.json                            (lowercase org slug + add
                                              mock-bigorg from main)
  - scripts/clone-manifest.sh                (keep main's MOLECULE_GITEA_TOKEN
                                              auth path + drop awk-tolower
                                              since manifest is now lowercase)

Resolution: union — staging's post-suspension Gitea/ECR migrations win
on URL/policy edits; main's additive work (mock-bigorg manifest entry,
inline ECR auth, MOLECULE_GITEA_TOKEN basic-auth) is preserved on top.

After this lands, staging is a strict superset of main, so the next
auto-sync run on a push to main will be a clean fast-forward / no-op.
The auto-sync workflow on main also picks up staging's AUTO_SYNC_TOKEN
swap (Class D #26) for free, fixing the latent layer-2 push-auth issue.

Verified locally:
  - bash -n scripts/clone-manifest.sh
  - python -c 'yaml.safe_load(...)' on each touched workflow
  - python -c 'json.load(open(manifest.json))' (21 plugins, 9 templates,
    7 org_templates)

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 14:24:37 -07:00

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name: publish-runtime
# Publishes molecule-ai-workspace-runtime to PyPI from monorepo workspace/.
# Monorepo workspace/ is the only source-of-truth for runtime code; this
# workflow is the bridge from monorepo edits to the PyPI artifact that
# the 8 workspace-template-* repos depend on.
#
# Triggered by:
# - Pushing a tag matching `runtime-vX.Y.Z` (the version is derived from
# the tag — `runtime-v0.1.6` publishes `0.1.6`).
# - Manual workflow_dispatch with an explicit `version` input (useful for
# dev/test releases without tagging the repo).
# - Auto: any push to `staging` that touches `workspace/**`. The version
# is derived by querying PyPI for the current latest and bumping the
# patch component. This closes the human-in-loop gap that caused the
# 2026-04-27 RuntimeCapabilities ImportError outage — adapter symbol
# additions in workspace/adapters/base.py used to require an operator
# to remember to publish; now the merge itself triggers the publish.
#
# The workflow:
# 1. Runs scripts/build_runtime_package.py to copy workspace/ →
# build/molecule_runtime/ with imports rewritten (`a2a_client` →
# `molecule_runtime.a2a_client`).
# 2. Builds wheel + sdist with `python -m build`.
# 3. Publishes to PyPI via the PyPA Trusted Publisher action (OIDC).
# No static API token is stored — PyPI verifies the workflow's
# OIDC claim against the trusted-publisher config registered for
# molecule-ai-workspace-runtime (molecule-ai/molecule-core,
# publish-runtime.yml, environment pypi-publish).
#
# After publish: the 8 template repos pick up the new version on their
# next image rebuild (their requirements.txt pin
# `molecule-ai-workspace-runtime>=0.1.0`, so any new release is eligible).
# To force-pull immediately, bump the pin in each template repo's
# requirements.txt and merge — that triggers their own publish-image.yml.
on:
push:
tags:
- "runtime-v*"
branches:
- staging
paths:
# Auto-publish when staging gets changes that affect what gets
# published. Path filter ONLY applies to branch pushes — tag pushes
# still fire regardless.
#
# workspace/** is the source-of-truth for runtime code.
# scripts/build_runtime_package.py is the build script — changes to
# it (e.g. a fix to the import rewriter or a manifest emit) directly
# affect what ships in the wheel even if no workspace/ file changes.
# The 2026-04-27 lib/ subpackage incident missed an auto-publish for
# exactly this reason — PR #2174 only changed scripts/ and the
# operator had to remember a manual dispatch.
- "workspace/**"
- "scripts/build_runtime_package.py"
workflow_dispatch:
inputs:
version:
description: "Version to publish (e.g. 0.1.6). Required for manual dispatch."
required: true
type: string
permissions:
contents: read
# Serialize publishes so two staging merges landing seconds apart don't
# both compute "latest+1" and race on PyPI upload. The second one waits.
concurrency:
group: publish-runtime
cancel-in-progress: false
jobs:
publish:
runs-on: ubuntu-latest
environment: pypi-publish
permissions:
contents: read
id-token: write # PyPI Trusted Publisher (OIDC) — no PYPI_TOKEN needed
outputs:
version: ${{ steps.version.outputs.version }}
wheel_sha256: ${{ steps.wheel_hash.outputs.wheel_sha256 }}
steps:
- uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
- uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
with:
python-version: "3.11"
cache: pip
- name: Derive version (tag, manual input, or PyPI auto-bump)
id: version
run: |
if [ "${{ github.event_name }}" = "workflow_dispatch" ]; then
VERSION="${{ inputs.version }}"
elif echo "$GITHUB_REF_NAME" | grep -q "^runtime-v"; then
# Tag is `runtime-vX.Y.Z` — strip the prefix.
VERSION="${GITHUB_REF_NAME#runtime-v}"
else
# Auto-publish from staging push. Query PyPI for the current
# latest and bump the patch component. concurrency: group above
# serializes parallel staging merges so we don't race on the
# bump. If PyPI is unreachable, fail loud — better to skip a
# publish than to overwrite an existing version.
LATEST=$(curl -fsS --retry 3 https://pypi.org/pypi/molecule-ai-workspace-runtime/json \
| python -c "import sys,json; print(json.load(sys.stdin)['info']['version'])")
MAJOR=$(echo "$LATEST" | cut -d. -f1)
MINOR=$(echo "$LATEST" | cut -d. -f2)
PATCH=$(echo "$LATEST" | cut -d. -f3)
VERSION="${MAJOR}.${MINOR}.$((PATCH+1))"
echo "Auto-bumped from PyPI latest $LATEST -> $VERSION"
fi
if ! echo "$VERSION" | grep -qE '^[0-9]+\.[0-9]+\.[0-9]+(\.dev[0-9]+|rc[0-9]+|a[0-9]+|b[0-9]+|\.post[0-9]+)?$'; then
echo "::error::version $VERSION does not match PEP 440"
exit 1
fi
echo "version=$VERSION" >> "$GITHUB_OUTPUT"
echo "Publishing molecule-ai-workspace-runtime $VERSION"
- name: Install build tooling
run: pip install build twine
- name: Build package from workspace/
run: |
python scripts/build_runtime_package.py \
--version "${{ steps.version.outputs.version }}" \
--out "${{ runner.temp }}/runtime-build"
- name: Build wheel + sdist
working-directory: ${{ runner.temp }}/runtime-build
run: python -m build
- name: Capture wheel SHA256 for cascade content-verification
# Recorded BEFORE upload so the cascade probe can verify the
# bytes Fastly serves under the new version's URL match what
# we built. Closes a hole left by #2197: that probe verified
# pip can resolve the version (catches propagation lag) but
# not that the wheel content matches (would silently pass a
# Fastly stale-content scenario where the new version's URL
# serves an old wheel binary).
id: wheel_hash
working-directory: ${{ runner.temp }}/runtime-build
run: |
set -eu
WHEEL=$(ls dist/*.whl 2>/dev/null | head -1)
if [ -z "$WHEEL" ]; then
echo "::error::No .whl in dist/ — `python -m build` must have failed silently"
exit 1
fi
HASH=$(sha256sum "$WHEEL" | awk '{print $1}')
echo "wheel_sha256=${HASH}" >> "$GITHUB_OUTPUT"
echo "Local wheel SHA256 (pre-upload): ${HASH}"
echo "Wheel filename: $(basename "$WHEEL")"
- name: Verify package contents (sanity)
working-directory: ${{ runner.temp }}/runtime-build
# Smoke logic lives in scripts/wheel_smoke.py so the same gate runs
# at both PR-time (runtime-prbuild-compat.yml) and publish-time
# (here). Splitting the smoke across two heredocs let them drift
# apart historically — one script keeps them locked.
run: |
python -m twine check dist/*
python -m venv /tmp/smoke
/tmp/smoke/bin/pip install --quiet dist/*.whl
/tmp/smoke/bin/python "$GITHUB_WORKSPACE/scripts/wheel_smoke.py"
- name: Publish to PyPI (Trusted Publisher / OIDC)
# PyPI side is configured: project molecule-ai-workspace-runtime →
# publisher molecule-ai/molecule-core, workflow publish-runtime.yml,
# environment pypi-publish. The action mints a short-lived OIDC
# token and exchanges it for a PyPI upload credential — no static
# API token in this repo's secrets.
uses: pypa/gh-action-pypi-publish@release/v1
with:
packages-dir: ${{ runner.temp }}/runtime-build/dist/
cascade:
# After PyPI accepts the upload, fan out a repository_dispatch to each
# template repo so they rebuild their image against the new runtime.
# Each template's `runtime-published.yml` receiver picks up the event,
# pulls the new PyPI version (their requirements.txt pin is `>=`), and
# republishes ghcr.io/molecule-ai/workspace-template-<runtime>:latest.
#
# Soft-fail per repo: if one template's dispatch fails (perms missing,
# repo archived, etc.) we still try the others and surface the failures
# in the workflow summary instead of aborting the whole cascade.
needs: publish
runs-on: ubuntu-latest
steps:
- name: Wait for PyPI to propagate the new version
# PyPI accepts the upload, then takes a few seconds to make the
# new version visible across all THREE surfaces pip touches:
# 1. /pypi/<pkg>/<ver>/json — metadata endpoint
# 2. /simple/<pkg>/ — pip's primary download index
# 3. files.pythonhosted.org — CDN-fronted wheel binary
# Each has its own cache. The previous check polled only (1)
# and would let the cascade fire while (2) or (3) still served
# the previous version, so downstream `pip install` resolved
# to the old wheel. Docker layer cache then locked that stale
# resolution in for subsequent rebuilds (the cache trap that
# bit us five times in one night).
#
# Two-stage probe per poll:
# (a) `pip install --no-cache-dir PACKAGE==VERSION` — succeeds
# only when the version is resolvable. Catches surface (1)
# and (2) propagation lag.
# (b) `pip download` of the same wheel + SHA256 compare against
# the just-built dist's hash. Catches surface (3) lag AND
# Fastly serving stale content under the new version's URL
# (a separate Fastly-corruption mode that pip-install alone
# can't see, since pip install resolves+unpacks against
# whatever bytes Fastly returns and never inspects them).
# Both must pass before the cascade fans out.
#
# The venv is reused across polls; only `pip install`/`pip
# download` run in the loop, with --force-reinstall +
# --no-cache-dir so the previous poll's cached state doesn't
# mask propagation lag.
env:
RUNTIME_VERSION: ${{ needs.publish.outputs.version }}
EXPECTED_SHA256: ${{ needs.publish.outputs.wheel_sha256 }}
run: |
set -eu
if [ -z "$EXPECTED_SHA256" ]; then
echo "::error::publish job did not expose wheel_sha256 — cannot verify wheel content. Refusing to fan out cascade."
exit 1
fi
python -m venv /tmp/propagation-probe
PROBE=/tmp/propagation-probe/bin
$PROBE/pip install --upgrade --quiet pip
# Poll budget: 30 attempts × (~3-5s pip install + ~3s pip
# download + 4s sleep) ≈ 5-6 min wall on a slow GH runner.
# Generous vs PyPI's typical few-seconds propagation;
# failures past this are signal of a real PyPI / Fastly
# issue, not just lag.
for i in $(seq 1 30); do
# Stage (a): can pip resolve and install the version?
if $PROBE/pip install \
--quiet \
--no-cache-dir \
--force-reinstall \
--no-deps \
"molecule-ai-workspace-runtime==${RUNTIME_VERSION}" \
>/dev/null 2>&1; then
INSTALLED=$($PROBE/pip show molecule-ai-workspace-runtime 2>/dev/null \
| awk -F': ' '/^Version:/{print $2}')
if [ "$INSTALLED" = "$RUNTIME_VERSION" ]; then
# Stage (b): does Fastly serve the bytes we uploaded?
# `pip download` writes the actual .whl file to disk so
# we can sha256sum it (vs `pip install` which unpacks
# and discards).
rm -rf /tmp/probe-dl
mkdir -p /tmp/probe-dl
if $PROBE/pip download \
--quiet \
--no-cache-dir \
--no-deps \
--dest /tmp/probe-dl \
"molecule-ai-workspace-runtime==${RUNTIME_VERSION}" \
>/dev/null 2>&1; then
WHEEL=$(ls /tmp/probe-dl/*.whl 2>/dev/null | head -1)
if [ -n "$WHEEL" ]; then
ACTUAL=$(sha256sum "$WHEEL" | awk '{print $1}')
if [ "$ACTUAL" = "$EXPECTED_SHA256" ]; then
echo "::notice::✓ pip resolves AND wheel content matches after ${i} poll(s) (sha256=${EXPECTED_SHA256})"
exit 0
fi
# Hash mismatch: PyPI accepted our upload but Fastly
# is serving different bytes under the version's URL.
# Most often this is propagation lag of the BINARY
# surface — the version is resolvable but the wheel
# cache hasn't caught up. Retry.
echo "::warning::poll ${i}: wheel content mismatch (got ${ACTUAL:0:12}…, want ${EXPECTED_SHA256:0:12}…) — Fastly likely still serving stale binary, retrying"
fi
fi
fi
fi
sleep 4
done
echo "::error::pip never resolved molecule-ai-workspace-runtime==${RUNTIME_VERSION} with matching wheel content within ~5 min."
echo "::error::Expected wheel SHA256: ${EXPECTED_SHA256}"
echo "::error::Refusing to fan out cascade against stale or corrupt PyPI surfaces."
exit 1
- name: Fan out via push to .runtime-version
env:
# Gitea PAT with write:repository scope on the 8 cascade-active
# template repos. Used here for `git push` (NOT for an API
# dispatch — Gitea 1.22.6 has no repository_dispatch endpoint;
# empirically verified across 6 candidate paths in molecule-
# core#20 issuecomment-913). The push trips each template's
# existing `on: push: branches: [main]` trigger on
# publish-image.yml, which then reads the updated
# .runtime-version via its resolve-version job.
DISPATCH_TOKEN: ${{ secrets.DISPATCH_TOKEN }}
RUNTIME_VERSION: ${{ needs.publish.outputs.version }}
run: |
set +e # don't abort on a single repo failure — collect them all
# Soft-skip on workflow_dispatch when the token is missing
# (operator ad-hoc test); hard-fail on push so unattended
# publishes can't silently skip the cascade. Same shape as
# the original v1, intentional split per the schedule-vs-
# dispatch hardening 2026-04-28.
if [ -z "$DISPATCH_TOKEN" ]; then
if [ "${{ github.event_name }}" = "workflow_dispatch" ]; then
echo "::warning::DISPATCH_TOKEN secret not set — skipping cascade."
echo "::warning::set it at Settings → Secrets and Variables → Actions, then rerun. Templates will stay on the prior runtime version until either this token is set or each template is rebuilt manually."
exit 0
fi
echo "::error::DISPATCH_TOKEN secret missing — cascade cannot fan out."
echo "::error::PyPI was published, but the 8 template repos will NOT pick up the new version until this token is restored and a republish dispatches the cascade."
echo "::error::set it at Settings → Secrets and Variables → Actions; then re-trigger publish-runtime via workflow_dispatch."
exit 1
fi
VERSION="$RUNTIME_VERSION"
if [ -z "$VERSION" ]; then
echo "::error::publish job did not expose a version output — cascade cannot fan out"
exit 1
fi
# All 9 workspace templates declared in manifest.json. The list
# MUST stay aligned with manifest.json's workspace_templates —
# cascade-list-drift-gate.yml enforces this in CI per the
# codex-stuck-on-stale-runtime invariant from PR #2556.
# Long-term goal: derive this list from manifest.json so it
# can't drift even on a manifest edit (RFC #388 Phase-1).
#
# Per-template publish-image.yml presence is checked at
# cascade-time below: codex doesn't ship one today, so the
# cascade soft-skips it with an informational message rather
# than dropping it from this list (which would re-introduce
# the drift the gate exists to catch).
GITEA_URL="${GITEA_URL:-https://git.moleculesai.app}"
TEMPLATES="claude-code hermes openclaw codex langgraph crewai autogen deepagents gemini-cli"
FAILED=""
SKIPPED=""
# Configure git identity once. The persona owning DISPATCH_TOKEN
# is the same identity that authored this commit on each
# template; using a generic "publish-runtime cascade" co-author
# trailer in the message keeps the audit trail honest about the
# workflow-driven origin.
git config --global user.name "publish-runtime cascade"
git config --global user.email "publish-runtime@moleculesai.app"
WORKDIR="$(mktemp -d)"
for tpl in $TEMPLATES; do
REPO="molecule-ai/molecule-ai-workspace-template-$tpl"
CLONE="$WORKDIR/$tpl"
# Pre-check: skip templates without a publish-image.yml.
# The cascade's job is to trip the template's on-push
# rebuild — if there's no rebuild workflow, pushing a
# .runtime-version commit is just noise on the target
# repo. Use the Gitea contents API (no clone required for
# the probe). 200 = present; 404 = absent.
HTTP=$(curl -sS -o /dev/null -w "%{http_code}" \
-H "Authorization: token $DISPATCH_TOKEN" \
"$GITEA_URL/api/v1/repos/$REPO/contents/.github/workflows/publish-image.yml")
if [ "$HTTP" = "404" ]; then
echo "↷ $tpl has no publish-image.yml — soft-skip (informational; manifest still tracks it)"
SKIPPED="$SKIPPED $tpl"
continue
fi
if [ "$HTTP" != "200" ]; then
echo "::warning::$tpl publish-image.yml probe returned HTTP $HTTP — proceeding anyway, push will surface the real failure if any"
fi
# Use a per-template attempt loop so a transient race (e.g.
# human pushing to the same template at the same instant)
# doesn't lose the cascade. Bounded retries (3) — beyond
# that we surface the failure and let the operator retry.
attempt=0
success=false
while [ $attempt -lt 3 ]; do
attempt=$((attempt + 1))
rm -rf "$CLONE"
if ! git clone --depth=1 \
"https://x-access-token:${DISPATCH_TOKEN}@${GITEA_URL#https://}/$REPO.git" \
"$CLONE" >/tmp/clone.log 2>&1; then
echo "::warning::clone $tpl attempt $attempt failed: $(tail -n3 /tmp/clone.log)"
sleep 2
continue
fi
cd "$CLONE"
echo "$VERSION" > .runtime-version
# Idempotency guard: if the file already matches, this
# publish is a re-run for a version already cascaded.
# Don't push a no-op commit (would spuriously re-trip the
# template's on-push and rebuild for nothing).
if git diff --quiet -- .runtime-version; then
echo "✓ $tpl already at $VERSION — no commit needed (idempotent)"
success=true
cd - >/dev/null
break
fi
git add .runtime-version
git commit -m "chore: pin runtime to $VERSION (publish-runtime cascade)" \
-m "Co-Authored-By: publish-runtime cascade <publish-runtime@moleculesai.app>" \
>/dev/null
if git push origin HEAD:main >/tmp/push.log 2>&1; then
echo "✓ $tpl pushed $VERSION on attempt $attempt"
success=true
cd - >/dev/null
break
fi
# Likely a non-fast-forward — pull-rebase and retry.
# Don't force-push: that would silently overwrite a racing
# human/cascade commit.
echo "::warning::push $tpl attempt $attempt failed, pull-rebasing: $(tail -n3 /tmp/push.log)"
git pull --rebase origin main >/tmp/rebase.log 2>&1 || true
cd - >/dev/null
done
if [ "$success" != "true" ]; then
FAILED="$FAILED $tpl"
fi
done
rm -rf "$WORKDIR"
if [ -n "$FAILED" ]; then
echo "::error::Cascade incomplete after 3 retries each. Failed templates:$FAILED"
echo "::error::PyPI publish succeeded; failed templates lag the new version. Re-run this workflow_dispatch with the same version to retry only the laggers (idempotent — already-cascaded templates skip)."
exit 1
fi
if [ -n "$SKIPPED" ]; then
echo "Cascade complete: pinned $VERSION on cascade-active templates. Soft-skipped (no publish-image.yml):$SKIPPED"
else
echo "Cascade complete: $VERSION pinned across all manifest workspace_templates."
fi