molecule-core/sdk/python/molecule_agent
Hongming Wang 50b0a1859a refactor(mcp-server): DRY envelopes, typed apiCall, explicit re-exports
Second-pass cleanup after the monolith split. Addresses every issue
from the code-review pass.

Core additions in src/api.ts:
- toMcpResult(data) + toMcpText(text): single source of truth for the
  MCP text-content envelope (was ~87 duplicated literals)
- ApiError type + isApiError(v) guard: typed discriminated-union for
  the error-by-value pattern; replaces open-coded shape checks
- apiCall<T = unknown>: generic so callers can document expected
  response shape without unchecked "as" casts

Bulk cleanups across all 12 tools/*.ts:
- Every handler now returns toMcpResult(data) or toMcpText(text)
- Open-coded "typeof obj === 'object' && 'error' in obj" in
  remote_agents.ts replaced with isApiError(v)
- Extracted initialCanvasPosition() helper out of
  handleCreateWorkspace; explains why random seeding exists
- Added runtime/workspace_dir/workspace_access to create_workspace
  zod schema (previously accepted by handler but hidden from clients)

src/index.ts:
- Replaced "export * from" with explicit named re-exports so the
  public surface is auditable and future name collisions fail loudly

Tests:
- createServer() smoke test that records every srv.tool(...) call and
  asserts 87 registered tools unique by name. Catches future PRs that
  forget to wire a registerXxxTools(srv).

Docs:
- Fix broken relative links in sdk/python/molecule_agent/README.md
  (was ../../examples/ from inside sdk/python/, should be ../examples/)
- Update stale "61 tools" -> "87 tools" in CLAUDE.md + main() log

Verification:
- npm run build clean
- npx jest -> 97/97 passed (was 96; +1 smoke test)
- grep "content: [{ type: \"text\" as const" src/tools/ -> 0 matches
- No file over 216 lines

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 14:26:17 -07:00
..
__init__.py chore: structural cleanup — dead dirs, moves, gitignore 2026-04-13 14:06:52 -07:00
client.py initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
README.md refactor(mcp-server): DRY envelopes, typed apiCall, explicit re-exports 2026-04-13 14:26:17 -07:00

molecule_agent — Remote-agent SDK for Molecule AI

Build a Python agent that runs outside a Molecule AI platform's Docker network and registers as a first-class workspace. The agent gets bearer-token auth, pulls its secrets, calls siblings, installs plugins from the platform's registry, and reacts to platform-initiated lifecycle events (pause, delete) — all over plain HTTP.

This is the client side of Phase 30. The platform side ships in the same release; this package is just the SDK an agent author imports.

Install

pip install molecule-sdk     # ships molecule_plugin + molecule_agent

60-second example

from molecule_agent import RemoteAgentClient

client = RemoteAgentClient(
    workspace_id="<the-uuid-of-an-external-workspace-on-the-platform>",
    platform_url="https://your-platform.example.com",
    agent_card={"name": "my-remote-agent", "skills": []},
)

# 1. Register and mint a bearer token (cached at ~/.molecule/<id>/.auth_token).
client.register()

# 2. Pull secrets the platform was set to inject.
secrets = client.pull_secrets()
# → {"OPENAI_API_KEY": "...", ...}

# 3. (Optional) install a plugin locally — pulls a tarball, unpacks, runs setup.sh.
client.install_plugin("molecule-dev")
client.install_plugin("my-plugin", source="github://acme/my-plugin")

# 4. Run the heartbeat + state-poll loop until the platform pauses/deletes us.
terminal = client.run_heartbeat_loop()
print(f"loop exited: {terminal}")

A runnable demo with full setup walkthrough lives at sdk/python/examples/remote-agent/.

What the SDK gives you

Method Phase What it does
register() 30.1 Mint + cache the workspace's bearer token
pull_secrets() 30.2 Token-gated GET of merged secrets dict
install_plugin(name, source=None) 30.3 Stream plugin tarball, atomic extract, run setup.sh
poll_state() 30.4 Lightweight {status, paused, deleted} poll
heartbeat(...) 30.1 Single bearer-authed heartbeat
get_peers() / discover_peer() 30.6 Sibling URL discovery with TTL cache
call_peer(target, message) 30.6 Direct A2A with proxy fallback
run_heartbeat_loop() combo Drives heartbeat + state-poll on a timer; exits on pause/delete

What it doesn't do (yet)

  • No inbound A2A server. Other agents can't initiate calls to your remote agent unless you host an HTTP endpoint yourself. Future start_a2a_server() helper will close this gap.
  • No automatic reconnect after token loss. If ~/.molecule/<id>/.auth_token is deleted, you'll need to re-issue the token via the platform admin (since POST /registry/register is idempotent — it won't mint a second token for a workspace that already has one).

Design choices

  • Blocking (requests), not async. Drops into any runtime — script, thread, asyncio loop. No framework lock-in.
  • Token cached on disk with 0600 so a restart of the agent doesn't re-issue (the platform refuses anyway). Lives at ~/.molecule/<workspace_id>/.auth_token.
  • URL cache for siblings is process-memory only, 5-minute TTL. Cleared on graceful failures via invalidate_peer_url.
  • Tar extraction uses _safe_extract_tar that rejects path-traversal and skips symlinks — defense against tar-slip CVEs in case a plugin source is compromised.

Compatibility

Requires a Molecule AI platform with Phase 30 endpoints (PR #122 onwards). Older platforms grandfather pre-token workspaces through, so this SDK also works against a transition-period deployment — but you won't get the security benefits of bearer auth until both sides upgrade.