molecule-core/scripts
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fix(post-suspension): redirect clone-manifest to Gitea (Class G #168 followup)
The Class G #168 PR (#40) caught explicit `github.com/Molecule-AI/<repo>`
URL literals in 23 files but missed two indirect forms:

- `scripts/clone-manifest.sh` lines 50,52 had
  `https://github.com/${repo}.git` (the org/repo path is a variable, so the
  Class-G regex `github\.com/Molecule-AI/` didn't match).
- `manifest.json` had `"Molecule-AI/<repo>"` (no `github.com` prefix; the
  prefix gets prepended by the script).

Together these are what `Dockerfile.tenant`'s stage-3 templates RUN
actually fetches. After PR #40 the harness-replays workflow against
staging still fails with `fatal: could not read Username for
'https://github.com'` because the in-image build is the unfixed shell
loop.

This PR:
- scripts/clone-manifest.sh: replaces both clone URLs with
  `https://git.moleculesai.app/${repo}.git`. Anonymous public clones
  work for these repos (verified manually).
- manifest.json: lowercases `Molecule-AI/` to `molecule-ai/` to match
  Gitea's canonical org slug. Gitea is case-insensitive so both work,
  but the lowercase form matches every other URL in the org and is
  what main's clone-manifest.sh (PR #38) already standardises on.

This is the minimum-diff staging fix. Sister #173 already shipped a
more sophisticated version on main (with optional MOLECULE_GITEA_TOKEN
auth + per-build pre-clone). When auto-sync resolves the staging-vs-main
conflict, this minimal version gets superseded by the main version
naturally.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 13:34:53 -07:00
..
demo-freeze-snapshots ops: demo-day freeze + rollback runbook 2026-05-01 12:04:30 -07:00
ops feat(ops): add sweep-aws-secrets janitor — orphan tenant bootstrap secrets 2026-05-03 02:38:08 -07:00
build_runtime_package.py fix(post-suspension): migrate github.com/Molecule-AI refs to git.moleculesai.app (Class G #168) 2026-05-07 13:08:15 -07:00
build-images.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
bundle-compile.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
canary-smoke.sh feat(canary): smoke harness + GHA verification workflow (Phase 2) 2026-04-19 03:30:19 -07:00
check-cascade-list-vs-manifest.sh feat(ci): structural drift gate for cascade list vs manifest (RFC #388 PR-3) 2026-05-03 03:52:39 -07:00
check-stale-promote-pr.sh feat(ops): hourly alarm for auto-promote PR stuck on REVIEW_REQUIRED (#2975) 2026-05-05 17:55:27 -07:00
cleanup-rogue-workspaces.sh fix(provisioner): stop rogue config-missing restart loop (#17) 2026-04-14 07:32:58 -07:00
clone-manifest.sh fix(post-suspension): redirect clone-manifest to Gitea (Class G #168 followup) 2026-05-07 13:34:53 -07:00
demo-day-runbook.md ops: demo-day freeze + rollback runbook 2026-05-01 12:04:30 -07:00
demo-freeze.sh fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46) 2026-05-07 00:56:23 -07:00
demo-thaw.sh ops: demo-day freeze + rollback runbook 2026-05-01 12:04:30 -07:00
dev-start.sh fix(dev-start): detect missing Go and fall back to docker-compose platform 2026-04-29 20:04:37 -07:00
import-agent.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
lockdown-tenant-sg.sh feat(security): Phase 35.1 — SG lockdown script for tenant EC2 instances 2026-04-18 12:01:41 -07:00
measure-coordinator-task-bounds-runner.sh fix(harness-runner): switch from non-existent /heartbeat-history to /activity 2026-04-28 23:12:51 -07:00
measure-coordinator-task-bounds.sh docs: registry pattern + harness scripts READMEs 2026-04-28 22:19:40 -07:00
nuke-and-rebuild.sh fix(scripts): nuke-and-rebuild self-bootstraps templates; add E2E test 2026-04-26 14:37:04 -07:00
post-rebuild-setup.sh security: remove hardcoded API keys from post-rebuild-setup.sh 2026-04-20 13:02:52 -07:00
README.md docs(internal): bulk-sed molecule-core .md docs → Gitea (#37 final molecule-core sweep) 2026-05-07 01:27:50 -07:00
refresh-workspace-images.sh fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46) 2026-05-07 00:56:23 -07:00
rollback-latest.sh fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46) 2026-05-07 00:56:23 -07:00
test_build_runtime_package.py chore: rewriter unit tests + drop misleading noqa on import inbox 2026-04-30 20:45:32 -07:00
test-a2a-cross-runtime.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-all-adapters.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-all-runtimes-a2a-e2e.sh test(e2e): wire SaaS auth headers (TENANT_ADMIN_TOKEN + TENANT_ORG_ID) 2026-05-02 04:36:23 -07:00
test-all.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-check-stale-promote-pr.sh feat(ops): hourly alarm for auto-promote PR stuck on REVIEW_REQUIRED (#2975) 2026-05-05 17:55:27 -07:00
test-cross-agent-chat.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
test-hermes-plugin-e2e.sh test(e2e): unified A2A round-trip parity harness across all 4 runtimes 2026-05-02 04:36:23 -07:00
test-nuke-and-rebuild.sh fix(scripts): nuke-and-rebuild self-bootstraps templates; add E2E test 2026-04-26 14:37:04 -07:00
test-team-e2e.sh initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
wheel_smoke.py feat(mcp): notifications/claude/channel for push-feel inbox UX 2026-04-30 20:10:01 -07:00

scripts/

Operational and one-off scripts for molecule-core. Most are self-documenting — see the header comments in each file.

RFC #2251 coordinator task-bound harnesses

There are three related scripts; pick the right one:

Script Purpose Targets
measure-coordinator-task-bounds.sh Canonical v1 harness for the RFC #2251 / Issue 4 reproduction. Provisions a PM coordinator + Researcher child via claude-code-default + langgraph templates, sends a synthesis-heavy A2A kickoff, observes elapsed time + activity trace. OSS-shape platform — localhost or any /workspaces-shaped endpoint. Has tenant/admin-token guards for non-localhost runs.
measure-coordinator-task-bounds-runner.sh Generalised runner for the same measurement contract but with arbitrary template + secret + model combinations (Hermes/MiniMax, etc.). Useful for cross-runtime variants without modifying the canonical harness. Same as above (local or SaaS via MODE=saas).
measure-coordinator-task-bounds.sh (in molecule-controlplane) Production-shape variant that bootstraps a real staging tenant via POST /cp/admin/orgs, then runs the same measurement against <slug>.staging.moleculesai.app. Staging controlplane only — refuses to run against production.

See reference_harness_pair_pattern (auto-memory) for when to use which and the cross-repo design rationale.

Common safety pattern across all three

  • Cleanup trap on EXIT/INT/TERM auto-deletes provisioned resources.
  • DRY_RUN=1 prints plan + auth fingerprint, exits before any state mutation. Run this before pointing at staging or any shared infrastructure.
  • Non-target guard refuses arbitrary endpoints (the controlplane variant is locked to staging-api.moleculesai.app; the OSS variant requires explicit auth + tenant scoping for non-localhost PLATFORM).
  • Cleanup failures emit cleanup_*_failed events with remediation hints; no silenced curl. ADMIN_TOKEN expiring mid-run surfaces as a structured event rather than a silent leak.

Activity trace caveat

If activity_trace.raw == "<endpoint_unavailable>", the per-workspace /activity endpoint isn't wired on the target build — the bound measurement is INCONCLUSIVE on the platform-ceiling question. Either wire the endpoint or replace with the equivalent Datadog query. Note that /activity accepts a since_secs query parameter; see the endpoint handler for the supported range.

Other scripts

  • cleanup-rogue-workspaces.sh — emergency teardown for leaked workspaces. Prompts for confirmation. Pair with the harnesses if a cleanup trap fails (see cleanup_*_failed events).
  • canary-smoke.sh — quick smoke test for canary releases.
  • dev-start.sh — local-dev platform bring-up.

The rest are self-documenting in their header comments.