7eda8f510f
15 Commits
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7eda8f510f |
feat(local-dev): containerize platform + canvas stack via docker-compose (closes #126)
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Replaces the legacy nohup `go run ./cmd/server` setup with a fully
containerized local stack: postgres + redis + platform + canvas, all
with `restart: unless-stopped` so they survive Mac sleep/wake and
Docker Desktop daemon restarts.
## Changes
- **docker-compose.yml**
- `restart: unless-stopped` on platform/postgres/redis
- `BIND_ADDR=0.0.0.0` for platform — the dev-mode-fail-open default
of 127.0.0.1 (PR #7) made the host unable to reach the container
even with port mapping. Container netns is already isolated, so
binding all interfaces inside is safe.
- Healthchecks switched from `wget --spider` (HEAD → 404 forever
because /health is GET-only) to `wget -qO /dev/null` (GET).
Same regression existed on canvas; fixed both.
- **workspace-server/Dockerfile.dev**
- `CGO_ENABLED=1` → `0` to match prod Dockerfile + Dockerfile.tenant.
Without this, the alpine dev image fails with "gcc: not found"
because workspace-server has no actual cgo deps but the env was
forcing the cgo build path. Closes a divergence introduced in
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d72f21da09 |
feat(local-dev): bind-mount ~/.molecule-ai/personas into platform container
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Closes core#242 LOCAL surface. The PROD surface (CP user-data fetching
persona env files into tenant EC2's /etc/molecule-bootstrap/personas
via Secrets Manager) is filed as a follow-up.
WHAT THIS ADDS
Bind-mount on the platform service in docker-compose.yml:
${MOLECULE_PERSONA_ROOT_HOST:-${HOME}/.molecule-ai/personas}
→ /etc/molecule-bootstrap/personas (read-only)
Default source = ${HOME}/.molecule-ai/personas (the operator-host-mirrored
local dir populated by today's persona rotation work). Override via
MOLECULE_PERSONA_ROOT_HOST when running on a machine with a different
layout (CI runners, etc.).
WHY READ-ONLY
workspace-server only reads persona env files; never writes back. The
read-only mount enforces that contract — a hostile plugin install path
can't tamper with the persona credentials it's about to consume.
WHY THIS PATH MATCHES PROD
/etc/molecule-bootstrap/personas is the same in-container path the
prod tenant EC2 will use. Same code path (org_import.go::loadPersonaEnvFile)
reads the same file regardless of mode — local-dev parity with prod
per feedback_local_must_mimic_production.
STAGE A VERIFICATION
- docker compose config: resolves to /Users/hongming/.molecule-ai/personas
correctly (28 persona dirs visible at source path)
- Persona env file shape verified: dev-lead's env contains GITEA_USER,
GITEA_USER_EMAIL, GITEA_TOKEN_SCOPES, GITEA_SSH_KEY_PATH,
MODEL_PROVIDER=claude-code, MODEL=opus (lead tier matches Hongming's
2026-05-08 mapping)
- Full handler test suite green (TestLoadPersonaEnvFile_HappyPath +
7 sibling tests pass; rejection tests still catch path traversal)
- Build clean
STAGE B SKIPPED (with justification per § Skip conditions)
This change is config-only (docker-compose.yml volume addition). The
prod tenant EC2s do NOT use docker-compose.yml — they use CP user-data
+ ec2.go's docker run script. So this PR has no prod blast radius.
Stage B (staging tenant probe) would be checking 'is the platform
using the new compose mount' on a SaaS tenant — and SaaS tenants
don't run docker compose. The actual prod-surface change is the
follow-up issue.
PROD SURFACE — FOLLOW-UP FILED
Tenant EC2 user-data needs to fetch persona env files from operator
host (or AWS Secrets Manager per the established
feedback_unified_credentials_file pattern) and stage them at
/etc/molecule-bootstrap/personas inside the workspace-server container.
Touches molecule-controlplane/internal/provisioner/ec2.go user-data.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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5d4184f4a3 |
fix(scripts): migrate ghcr.io→ECR + raw.githubusercontent.com→Gitea (#46)
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Per documentation-specialist's grep agent (2026-05-07T07:30, see internal#46): runtime-breaking ghcr.io references in shell scripts + docker-compose + the slip-past-workflow lint_secret_pattern_drift.py all need migration. These were missed by security-auditor's workflow-only audit. Files (6): - .github/scripts/lint_secret_pattern_drift.py:40 — workspace-runtime pre-commit-checks.sh consumer URL: raw.githubusercontent.com → Gitea raw URL (https://git.moleculesai.app/molecule-ai/.../raw/ branch/main/...). The lint job runs in CI and would 404 today. - scripts/refresh-workspace-images.sh:54 — workspace-template image pull URL: ghcr.io → ECR (153263036946.dkr.ecr.us-east-2.amazonaws.com). - scripts/rollback-latest.sh — full rewrite of header + auth flow: * ghcr.io/molecule-ai/{platform,platform-tenant} → ECR * GITHUB_TOKEN with write:packages → AWS ECR auth (aws ecr get-login-password). Per saved memory reference_post_suspension_pipeline, prod cutover is to ECR. * Updated header docs to match new auth flow + prereqs. - scripts/demo-freeze.sh:13,17 — comment-only ghcr → ECR (the script doesn't currently exec these URLs, but the comments describe the cascade and need to match reality). - docker-compose.yml:215-216 — canvas image: ghcr.io → ECR + updated the auth comment to describe `aws ecr get-login-password` flow. - tools/check-template-parity.sh:21 — inline curl install instructions: raw.githubusercontent.com → Gitea raw URL. Hostile self-review: 1. rollback-latest.sh's GITHUB_TOKEN→aws-cli auth swap is a behavior change. Operators using this script now need aws CLI authenticated for region us-east-2 with ECR pull/push perms. Documented in updated header. Operators who don't have aws CLI will get 'aws: command not installed' which is a clear failure mode (not silent). 2. The Gitea raw URL shape (/raw/branch/main/) differs from GitHub's raw.githubusercontent.com structure. Verified pattern by inspecting other Gitea raw URLs in the codebase. If Gitea's URL changes (1.23+), update via the same one-line edit. 3. Doesn't touch packer/scripts/install-base.sh which has a similar ghcr.io ref per the grep agent's findings — that's bigger-scope (packer build pipeline) and lives in molecule-controlplane-ish territory; filing as parked follow-up under #46 if not already. Refs: molecule-ai/internal#46, molecule-ai/internal#37, molecule-ai/internal#38, saved memory reference_post_suspension_pipeline |
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1c38c78f5e
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feat(compose): IMAGE_AUTO_REFRESH=true by default in local dev (#2116)
Picks up the GHCR digest watcher added in PR #2114 with no operator action: just `docker compose up` and the platform self-heals to the latest workspace-template image within 5 minutes of publish. Default ON for local dev because that's where the runtime → workspace iteration loop is tightest. .env.example documents the override knob for the rare "running a long test that shouldn't be disturbed by a publish" case. Co-authored-by: Hongming Wang <hongmingwangalt@gmail.com> Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com> |
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50decfd326 |
chore(compose): wire MOLECULE_ENV, GHCR_USER/TOKEN, MOLECULE_IMAGE_PLATFORM
Three env vars the platform now reads: - MOLECULE_ENV=development (default) — activates the WorkspaceAuth / AdminAuth dev fail-open path so the canvas's bearer-less requests pass through. Also unlocks RFC-1918 relaxation in the SSRF guard so docker- bridge IPs work. Override to 'production' for staged deploys. - GHCR_USER + GHCR_TOKEN — feed POST /admin/workspace-images/refresh's ImagePull auth payload. Both empty → endpoint can pull cached/public images only. Set with a fine-grained PAT (read:packages on Molecule-AI org) to pull private GHCR images. - MOLECULE_IMAGE_PLATFORM=linux/amd64 (default) — workspace-template-* images ship single-arch amd64. On Apple Silicon hosts, the daemon's native linux/arm64/v8 request misses the manifest and pulls fail. Forcing amd64 makes Docker Desktop run them under Rosetta — slower (~2-3×) but functional. 🤖 Generated with [Claude Code](https://claude.com/claude-code) |
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9ad803a802
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fix(quickstart): make README cp-paste flow bugless end-to-end (#1871)
Reproducing the README's quickstart on a clean clone surfaced seven independent bugs between `git clone` and seeing the Canvas in a browser. Each fix is minimal and local-dev-only — the SaaS/EC2 provisioner path (issue #1822) is untouched. Bugs fixed: 1. `infra/scripts/setup.sh` applied migrations via raw psql, bypassing the platform's `schema_migrations` tracker. The platform then re-ran every migration on first boot and crashed on non-idempotent ALTER TABLE statements (e.g. `036_org_api_tokens_org_id.up.sql`). Dropped the migration block — `workspace-server/internal/db/postgres.go:53` already tracks and skips applied files. 2. `.env.example` shipped `DATABASE_URL=postgres://USER:PASS@postgres:...` with literal `USER:PASS` placeholders and the Docker-internal hostname `postgres`. A `cp .env.example .env` followed by `go run ./cmd/server` on the host failed with `dial tcp: lookup postgres: no such host`. Replaced with working `dev:dev@localhost:5432` defaults that match `docker-compose.infra.yml`. 3. `docker-compose.infra.yml` and `docker-compose.yml` set `CLICKHOUSE_URL: clickhouse://...:9000/...`. Langfuse v2 rejects anything other than `http://` or `https://`, so the container crash-looped and returned HTTP 500. Switched to `http://...:8123` (HTTP interface) and added `CLICKHOUSE_MIGRATION_URL` for the migration-time native-protocol connection. Also removed `LANGFUSE_AUTO_CLICKHOUSE_MIGRATION_DISABLED` so migrations actually run. 4. `canvas/package.json` dev script crashed with `EADDRINUSE :::8080` when `.env` was sourced before `npm run dev` — Next.js reads `PORT` from env and the platform owns 8080. Pinned `dev` to `-p 3000` so sourced env can't hijack it. `start` left as-is because production `node server.js` (Dockerfile CMD) must respect `PORT` from the orchestrator. 5. README/CONTRIBUTING told users to clone `Molecule-AI/molecule-monorepo` — that repo 404s; the actual name is `molecule-core`. The Railway and Render deploy buttons had the same broken URL. Replaced in both English and Chinese READMEs and in CONTRIBUTING. Internal identifiers (Go module path, Docker network `molecule-monorepo-net`, Python helper `molecule-monorepo-status`) deliberately left alone — renaming those is an invasive refactor orthogonal to this fix. 6. README quickstart was missing `cp .env.example .env`. Users who went straight from `git clone` to `./infra/scripts/setup.sh` got a script that warned about an unset `ADMIN_TOKEN` (harmless) but then couldn't run the platform without figuring out the env setup on their own. Added the step in both READMEs and CONTRIBUTING. Deliberately NOT generating `ADMIN_TOKEN`/`SECRETS_ENCRYPTION_KEY` here — the e2e-api suite (`tests/e2e/test_api.sh`) assumes AdminAuth fallback mode (no server-side `ADMIN_TOKEN`), which is how CI runs it. 7. CI shellcheck only covered `tests/e2e/*.sh` — `infra/scripts/setup.sh` is in the critical path of every new-user onboarding but was never linted. Extended the `shellcheck` job and the `changes` filter to cover `infra/scripts/`. `scripts/` deliberately excluded until its pre-existing SC3040/SC3043 warnings are cleaned up separately. Verification (fresh nuke-and-rebuild following the updated README): - `docker compose -f docker-compose.infra.yml down -v` + `rm .env` - `cp .env.example .env` → defaults work as-is - `bash infra/scripts/setup.sh` — clean, no migration errors, all 6 infra containers healthy - `cd workspace-server && go run ./cmd/server` — "Applied 41 migrations (0 already applied)", platform on :8080/health 200 - `cd canvas && npm install && npm run dev` — Canvas on :3000/ 200 even with `.env` sourced (PORT=8080 in env) - `bash tests/e2e/test_api.sh` — **61 passed, 0 failed** - `cd canvas && npx vitest run` — **900 tests passed** - `cd canvas && npm run build` — production build clean - `shellcheck --severity=warning infra/scripts/*.sh` — clean - Langfuse `/api/public/health` 200 (was 500) Scope notes: - SaaS/EC2 parity (issue #1822): all files touched here are local-dev surface. Canvas container uses `node server.js` with `ENV PORT=3000` in `canvas/Dockerfile` — the `-p 3000` pin in `package.json` dev script only affects `npm run dev`, not the production CMD. - Test coverage (issue #1821): project policy is tiered coverage floors, not a blanket 100% target. Files touched here are shell scripts, YAML, Markdown, and one package.json script — not classes covered by the coverage matrix. - No overlap with open PRs — searched `setup.sh`, `quickstart`, `langfuse`, `clickhouse`, `migration`, `README`; nothing conflicts. Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com> Co-authored-by: molecule-ai[bot] <276602405+molecule-ai[bot]@users.noreply.github.com> |
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b0ea25cc36 |
fix(canvas): add NEXT_PUBLIC_ADMIN_TOKEN + CSP_DEV_MODE to docker-compose
Canvas needs AdminAuth token to fetch /workspaces (gated since PR #729) and CSP_DEV_MODE to allow cross-port fetches in local Docker. These were added earlier but lost on nuke+rebuild because they weren't committed to staging. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |
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dd878b819b |
fix: remaining platform/ path references in scripts, tests, compose
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |
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479a027e4b |
chore: open-source restructure — rename dirs, remove internal files, scrub secrets
Renames: - platform/ → workspace-server/ (Go module path stays as "platform" for external dep compat — will update after plugin module republish) - workspace-template/ → workspace/ Removed (moved to separate repos or deleted): - PLAN.md — internal roadmap (move to private project board) - HANDOFF.md, AGENTS.md — one-time internal session docs - .claude/ — gitignored entirely (local agent config) - infra/cloudflare-worker/ → Molecule-AI/molecule-tenant-proxy - org-templates/molecule-dev/ → standalone template repo - .mcp-eval/ → molecule-mcp-server repo - test-results/ — ephemeral, gitignored Security scrubbing: - Cloudflare account/zone/KV IDs → placeholders - Real EC2 IPs → <EC2_IP> in all docs - CF token prefix, Neon project ID, Fly app names → redacted - Langfuse dev credentials → parameterized - Personal runner username/machine name → generic Community files: - CONTRIBUTING.md — build, test, branch conventions - CODE_OF_CONDUCT.md — Contributor Covenant 2.1 All Dockerfiles, CI workflows, docker-compose, railway.toml, render.yaml, README, CLAUDE.md updated for new directory names. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |
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| 246b963d5d |
docs(env): audit .env.example completeness after platform sprint (issue #782)
Adds two missing env vars to .env.example + docker-compose.yml platform block: 1. HIBERNATION_IDLE_MINUTES (default 60) Source: issue #724 / workspace hibernation feature. Note: currently configured per-workspace via the hibernation_idle_minutes DB column. This placeholder documents the planned global-default env var; the platform does not yet read it. Per-workspace DB column is active now. 2. PLUGIN_ALLOW_UNPINNED (empty = false) Source: issue #768 / PR #775 (supply chain hardening, not yet merged). Pre-emptive documentation — takes effect when PR #775 lands. ADMIN_TOKEN (item 3): already present with clear generation instructions (openssl rand -base64 32) and NEVER-commit reminder. No changes needed. docker-compose.yml cross-check — vars present in .env.example but absent from the platform service env block (flagged, not fixed in this PR — all have safe compiled-in defaults and are optional): SECRETS_ENCRYPTION_KEY, AWARENESS_URL, MOLECULE_ENV, MOLECULE_IN_DOCKER, MOLECULE_ENABLE_TEST_TOKENS, MOLECULE_ORG_ID, CP_PROVISION_URL, ACTIVITY_RETENTION_DAYS, ACTIVITY_CLEANUP_INTERVAL_HOURS, REMOTE_LIVENESS_STALE_AFTER, PLUGIN_INSTALL_{BODY_MAX_BYTES,FETCH_TIMEOUT, MAX_DIR_BYTES}, TIER{2,3,4}_{MEMORY_MB,CPU_SHARES}, WORKSPACE_DIR. These are not forwarded by docker-compose because they either auto-detect or have safe defaults — operators override them via .env on the host. Adding all of them to docker-compose would be noisy; a separate cleanup issue tracks this. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> |
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| aa38fc55ed |
fix(infra): wire ADMIN_TOKEN env placeholder to close issue #684 (PR #729)
Backend Engineer's PR #729 introduces ADMIN_TOKEN — when set, only that value is accepted on /admin/* and /approvals/* routes, replacing the vulnerable workspace-bearer fallback. Without the env var wired into deployments the fix is code-only and the vulnerability stays open in every running instance. Changes: - `docker-compose.yml`: adds ADMIN_TOKEN env var to the platform service (blank default = backward-compat fallback, i.e. still vulnerable until set). NOTE: docker-compose.infra.yml has no platform service — the platform lives only in the full-stack docker-compose.yml, so that is the correct file. - `.env.example`: documents ADMIN_TOKEN with generation instructions and a clear warning that it must be set to close #684. - `infra/scripts/setup.sh`: prints a visible warning when ADMIN_TOKEN is unset so operators know the vulnerability is still open in that deployment. - `CLAUDE.md`: adds ADMIN_TOKEN to the env vars reference section. No Go code changed — go build ./... passes clean. Part of fix for #684 / PR #729 Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> |
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3609b7ab8c |
feat(platform): wire github-app-auth plugin for per-installation tokens
Integrates github.com/Molecule-AI/molecule-ai-plugin-github-app-auth. When GITHUB_APP_ID is set, the platform constructs a plugin Authenticator at boot and registers it as an EnvMutator on the WorkspaceHandler. Every workspace provision then gets a fresh GITHUB_TOKEN / GH_TOKEN injected from the App's installation token (rotates ~hourly, refresh 5 min before expiry). Verified live this turn: - Platform boot log: `github-app-auth: registered, 1 mutator(s) in chain` - `docker exec ws-<id> gh auth status` → `Logged in as molecule-ai[bot] (GH_TOKEN)` - `gh issue list --repo Molecule-AI/molecule-core` returns real data (Hermes #498/#499/#500 visible from inside a workspace container) ## Changes - platform/go.mod + go.sum: new dep on the plugin - platform/cmd/server/main.go: import + conditional registration (soft-skip when GITHUB_APP_ID is unset for self-hosted/dev) - docker-compose.yml: pass GITHUB_APP_* env + bind-mount private key ## Drive-by .gitignore: exclude /org-templates /plugins /workspace-configs-templates — these dirs are populated locally by clone-manifest.sh from the standalone repos, should never be committed to core. Without this rule my previous git add -A staged 33 embedded git dirs. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |
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239e211d3d |
fix(compose): platform build context must be repo root, not ./platform
The platform Dockerfile COPYs paths relative to the repo root — \`COPY platform/go.mod\`, \`COPY platform/migrations\`, \`COPY workspace-configs-templates\`. The compose file was setting \`context: ./platform\`, which silently caused those COPY layers to miss + stop invalidating cache. Symptom (caught 2026-04-16 10:22 UTC): after PR #417 (memory schema migration 023) merged + I ran \`docker compose up -d --build platform\`, the rebuild was a no-op. Image SHA didn't change, container booted with old migration set, \`Applied 22 migrations\` instead of the expected 23. Migration 023 file was on disk locally but never reached the image. Workaround was \`docker build -t molecule-monorepo-platform:fresh -f platform/Dockerfile .\` from repo root → SHA changed, migration 023 applied. This commit makes \`docker compose up -d --build platform\` work correctly without the manual workaround. CI workflow already builds with \`context: .\` + \`file: ./platform/Dockerfile\` (per the comment at the top of platform/Dockerfile). This change just aligns the local compose file with what CI does. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |
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4a95aa3e98 |
feat(ci): auto-publish canvas Docker image to GHCR on canvas/** merges
Closes #399. ## Root cause `publish-platform-image.yml` existed for the Go platform image but there was no equivalent for the canvas. After every canvas PR merged, CI ran `npm run build` and passed — but the live container at :3000 was never updated. The `canvas-deploy-reminder` job only posted a comment asking operators to manually rebuild, which was consistently missed. ## What this adds - `.github/workflows/publish-canvas-image.yml`: triggers on `canvas/**` changes to main (and `workflow_dispatch`). Mirrors the platform workflow: macOS Keychain isolation, QEMU for linux/amd64, Buildx, GHCR push with `:latest` + `:sha-<7>` tags. - `NEXT_PUBLIC_PLATFORM_URL` / `NEXT_PUBLIC_WS_URL` resolve from `workflow_dispatch` inputs → `CANVAS_PLATFORM_URL` / `CANVAS_WS_URL` repo secrets → `localhost:8080` defaults (safe for self-hosted dev). - Inputs are passed via env vars (not direct `${{ }}` interpolation) to prevent shell injection from string inputs. - `docker-compose.yml`: adds `image: ghcr.io/molecule-ai/canvas:latest` to the canvas service so `docker compose pull canvas && docker compose up -d canvas` applies the new image. `build:` is retained for local development. Adds a comment clarifying that `NEXT_PUBLIC_*` runtime env vars are ignored by the standalone bundle (build-time only). - `ci.yml`: updates `canvas-deploy-reminder` commit comment to reference `docker compose pull` as the fast path, with `docker compose build` as the local-source fallback. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com> |
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24fec62d7f |
initial commit — Molecule AI platform
Forked clean from public hackathon repo (Starfire-AgentTeam, BSL 1.1) with full rebrand to Molecule AI under github.com/Molecule-AI/molecule-monorepo. Brand: Starfire → Molecule AI. Slug: starfire / agent-molecule → molecule. Env vars: STARFIRE_* → MOLECULE_*. Go module: github.com/agent-molecule/platform → github.com/Molecule-AI/molecule-monorepo/platform. Python packages: starfire_plugin → molecule_plugin, starfire_agent → molecule_agent. DB: agentmolecule → molecule. History truncated; see public repo for prior commits and contributor attribution. Verified green: go test -race ./... (platform), pytest (workspace-template 1129 + sdk 132), vitest (canvas 352), build (mcp). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |