6 Commits

Author	SHA1	Message	Date
documentation-specialist	26afbbfdf4	docs(internal): bulk-sed molecule-core .md docs → Gitea (#37 final molecule-core sweep) ... Mass-sed across 17 files / 38 active refs in molecule-core .md docs (README + CONTRIBUTING + docs/architecture/ + docs/blog/ + docs/guides/ + docs/integrations/ + docs/quickstart.md + scripts/README.md). Driver: /tmp/sweep_core.py — same pattern set as the internal-marketing bulk-sed (PR #50). 4 url-substitution patterns + SKIP_PATTERN preserves /pull/<n> /issues/<n> /commit/<sha> /releases/... historical refs. Files NOT touched in this PR: - docs/workspace-runtime-package.md — owned by molecule-core#15 (workspace-runtime source-edit per #41). Reverted my bulk-sed of that file to avoid merge conflict. - 2 Go-import-path refs in docs/memory-plugins/testing-your-plugin.md (github.com/Molecule-AI/molecule-monorepo/platform/internal/...) — Q5 cross-repo Go-module migration territory. - 1 GitHub Gist link in docs/guides/external-workspace-quickstart.md (gist.github.com/molecule-ai/...) — no Gitea equivalent; consistent with the same handling in docs#1. Manual fixes (2): - docs/blog/2026-04-20-chrome-devtools-mcp-seo/index.md:306 — GitHub Discussions (no Gitea equivalent) → issue tracker link - docs/guides/external-workspace-quickstart.md:218 — tracking-issue ?q= query-string url (regex didn't catch) → reformulated text + Gitea search-by-query approach Pattern matches my docs#1 (public docs site) PR + internal#50 (internal/marketing bulk-sed). Standard substitutions: - https://github.com/Molecule-AI/<repo> → https://git.moleculesai.app/molecule-ai/<repo> - /blob/<branch>/ + /tree/<branch>/ → /src/branch/<branch>/ Refs: molecule-ai/internal#37, molecule-ai/internal#38	2026-05-07 01:27:50 -07:00
Hongming Wang	eec4ea2e7d	chore: delete TeamHandler.Collapse + docs cleanup (closes #2864) ... Multi-model retrospective review of #2856 (Phase 1 Expand removal) flagged that TeamHandler.Collapse is unreachable from the canvas UI: the "Collapse Team" button calls PATCH /workspaces/:id { collapsed } (visual flag toggle on canvas_layouts), NOT POST /workspaces/:id/collapse. The destructive POST route — which stops EC2s, marks children removed, and deletes layouts — has zero UI callers (verified via grep across canvas/, scripts/, and the MCP tool registry; only docs referenced it). Two semantically different operations had been sharing the word "Collapse": - Visual collapse (canvas) → PATCH { collapsed: true }. Hides children visually. Reversible. UI-only. - Destructive collapse (POST /collapse) → Stops + marks removed. Irreversible. No caller. Deleting the destructive one + its supporting machinery: - workspace-server/internal/handlers/team.go (entirely) - workspace-server/internal/handlers/team_test.go (entirely) - POST /collapse route + teamh init in router.go - findTemplateDirByName helper (zero non-test callers after Expand was deleted in #2856; package-private so no out-of-package consumers) - NewTeamHandler constructor (no callers after route removed) Plus stale doc references (the most dangerous was the MCP wrapper mapping in mcp-server-setup.md — anyone generating MCP tool wrappers from that table was wiring a 404): - docs/agent-runtime/team-expansion.md (deleted entirely — whole guide taught the deleted flow) - docs/api-reference.md (dropped two team.go rows) - docs/api-protocol/platform-api.md (dropped /expand + /collapse rows) - docs/architecture/molecule-technical-doc.md (dropped /expand + /collapse rows) - docs/guides/mcp-server-setup.md (dropped expand_team + collapse_team MCP wrapper mappings) - docs/glossary.md (dropped "(org template expand_team)" parenthetical) - docs/frontend/canvas.md (dropped broken link to deleted team-expansion.md) Kept: docs/architecture/backends.md mention of "TeamHandler.Expand (#2367) bypassed routing on Start" — correct historical context for the AST gate's existence, no live route reference. Visual-collapse path unaffected: canvas/src/components/ContextMenu.tsx:227 → api.patch — unchanged canvas/src/components/WorkspaceNode.tsx:128 → api.patch — unchanged go vet ./... clean. go test ./internal/handlers/ -count 1 — all green (4.3s, no regression). Net: -388/+10 = ~378 lines removed. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>	2026-05-05 11:59:43 -07:00
Hongming Wang	2f7beb9bce	feat: drop shared_context — use memory v2 team namespace instead ... Parent → child knowledge sharing previously lived behind a `shared_context` list in config.yaml: at boot, every child workspace HTTP-fetched its parent's listed files via GET /workspaces/:id/shared-context and prepended them as a "## Parent Context" block. That paid the full transfer cost on every boot regardless of whether the agent needed it, single-parent SPOF, no team or org scope, and broken if the parent was unreachable. Replace with memory v2's team:<id> namespace: agents call recall_memory on demand. For large blob-shaped artefacts see RFC #2789 (platform-owned shared file storage). Removed: - workspace/coordinator.py: get_parent_context() - workspace/prompt.py: parent_context arg + injection block - workspace/adapter_base.py: import + call + arg pass - workspace/config.py: shared_context field + parser entry - workspace-server/internal/handlers/templates.go: SharedContext handler - workspace-server/internal/router/router.go: GET /shared-context route - canvas/src/components/tabs/ConfigTab.tsx: Shared Context tag input - canvas/src/components/tabs/config/form-inputs.tsx: schema field + default - canvas/src/components/tabs/config/yaml-utils.ts: serializer entry - 6 tests pinning the removed behavior; 5 doc references Added regression gates so any reintroduction is loud: - workspace/tests/test_prompt.py: build_system_prompt must NOT emit "## Parent Context" - workspace/tests/test_config.py: legacy YAML key loads cleanly but shared_context attr must NOT exist on WorkspaceConfig - tests/e2e/test_staging_full_saas.sh §9d: GET /shared-context must NOT return 200 against a live tenant Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>	2026-05-04 16:30:26 -07:00
rabbitblood	262a52a32c	docs(security): document the KMS-rooted custody chain for SECRETS_ENCRYPTION_KEY ... External architecture review flagged the SECRETS_ENCRYPTION_KEY env var on the platform as encryption-at-rest theater. The reviewer read only the platform repo and missed that the master key actually lives in AWS KMS at the control plane layer, with envelope encryption wrapping each tenant secret blob. Adds docs/architecture/secrets-key-custody.md as the canonical source of truth for the full chain: - Two-mode envelope (KMS_KEY_ARN vs static-key fallback) - Per-blob AES-256-GCM with KMS-wrapped DEKs - Where each key actually lives (KMS, CP env, tenant env) - Threat model per attacker capability - Rotation story (annual KMS CMK rotation, manual DEK rotation on incident) - Audit posture (SOC2 / ISO 27001 questionnaire bullets) Patches three downstream docs that previously stopped at the env-var level and link them to the new custody doc: - development/constraints-and-rules.md (Rule 11) - architecture/database-schema.md (workspace_secrets paragraph) - architecture/molecule-technical-doc.md (env-vars table) Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>	2026-04-26 11:29:16 -07:00
Hongming Wang	479a027e4b	chore: open-source restructure — rename dirs, remove internal files, scrub secrets ... Renames: - platform/ → workspace-server/ (Go module path stays as "platform" for external dep compat — will update after plugin module republish) - workspace-template/ → workspace/ Removed (moved to separate repos or deleted): - PLAN.md — internal roadmap (move to private project board) - HANDOFF.md, AGENTS.md — one-time internal session docs - .claude/ — gitignored entirely (local agent config) - infra/cloudflare-worker/ → Molecule-AI/molecule-tenant-proxy - org-templates/molecule-dev/ → standalone template repo - .mcp-eval/ → molecule-mcp-server repo - test-results/ — ephemeral, gitignored Security scrubbing: - Cloudflare account/zone/KV IDs → placeholders - Real EC2 IPs → <EC2_IP> in all docs - CF token prefix, Neon project ID, Fly app names → redacted - Langfuse dev credentials → parameterized - Personal runner username/machine name → generic Community files: - CONTRIBUTING.md — build, test, branch conventions - CODE_OF_CONDUCT.md — Contributor Covenant 2.1 All Dockerfiles, CI workflows, docker-compose, railway.toml, render.yaml, README, CLAUDE.md updated for new directory names. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>	2026-04-18 00:24:44 -07:00
Hongming Wang	24fec62d7f	initial commit — Molecule AI platform ... Forked clean from public hackathon repo (Starfire-AgentTeam, BSL 1.1) with full rebrand to Molecule AI under github.com/Molecule-AI/molecule-monorepo. Brand: Starfire → Molecule AI. Slug: starfire / agent-molecule → molecule. Env vars: STARFIRE_* → MOLECULE_*. Go module: github.com/agent-molecule/platform → github.com/Molecule-AI/molecule-monorepo/platform. Python packages: starfire_plugin → molecule_plugin, starfire_agent → molecule_agent. DB: agentmolecule → molecule. History truncated; see public repo for prior commits and contributor attribution. Verified green: go test -race ./... (platform), pytest (workspace-template 1129 + sdk 132), vitest (canvas 352), build (mcp). Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>	2026-04-13 11:55:37 -07:00