26 changed files with 102 additions and 137 deletions
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@ -6,7 +6,12 @@ on:
    branches: [main]
 jobs:
  build:
-    runs-on: ubuntu-latest
+    # Self-hosted Mac mini — this repo is private and the org's
+    # GitHub-hosted minute budget is exhausted (every ubuntu-latest job
+    # dies in 2s with no step output). Per the 2026-04-22 carve-out:
+    # private repos run on self-hosted; public repos use ubuntu-latest
+    # (still free).
+    runs-on: self-hosted
    steps:
      - uses: actions/checkout@v4
      - uses: actions/setup-node@v4
--- a/app/(home)/page.tsx
+++ b/app/(home)/page.tsx
@ -18,10 +18,10 @@ export default function HomePage() {
          Read the docs
        </Link>
        <Link
-          href="https://git.moleculesai.app/molecule-ai/molecule-core"
+          href="https://github.com/Molecule-AI/molecule-monorepo"
          className="rounded-md border border-fd-border px-5 py-2.5 text-sm font-medium transition-colors hover:bg-fd-muted"
        >
-          View on Gitea
+          View on GitHub
        </Link>
      </div>
    </main>
--- a/content/docs/architecture.mdx
+++ b/content/docs/architecture.mdx
@ -138,7 +138,7 @@ These controls complement the platform-level secret redaction described in the [

 **Stack:** Go / Bubbletea + Lipgloss

-A terminal UI dashboard for real-time workspace monitoring, event log streaming, health overview, and delete/filter operations. Reads `MOLECLI_URL` (default `http://localhost:8080`) to locate the platform. Now published as a standalone repo at `git.moleculesai.app/molecule-ai/molecule-cli`.
+A terminal UI dashboard for real-time workspace monitoring, event log streaming, health overview, and delete/filter operations. Reads `MOLECLI_URL` (default `http://localhost:8080`) to locate the platform. Now published as a standalone repo at `github.com/Molecule-AI/molecule-cli`.

 ---

--- a/content/docs/architecture/molecule-technical-doc.md
+++ b/content/docs/architecture/molecule-technical-doc.md
@ -4,7 +4,7 @@ title: "Molecule AI — Comprehensive Technical Documentation"
 # Molecule AI — Comprehensive Technical Documentation

 > Definitive technical reference for the Molecule AI Agent Team platform.
-> Based on a full non-invasive scan of the [molecule-core](https://git.moleculesai.app/molecule-ai/molecule-core) repository (formerly `molecule-monorepo`, renamed during the post-2026-05-06 GitHub-org-suspension recovery).
+> Based on a full non-invasive scan of the [molecule-monorepo](https://github.com/Molecule-AI/molecule-monorepo) repository.

 ---

@ -1153,11 +1153,11 @@ Molecule AI's workspace abstraction is **runtime-agnostic by design**. A workspa

 ## Links

- **Gitea**: https://git.moleculesai.app/molecule-ai/molecule-core
- **Architecture Docs**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/architecture
- **API Protocol**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/api-protocol
- **Agent Runtime**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/agent-runtime
- **Product Docs**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/product
+- **GitHub**: https://github.com/Molecule-AI/molecule-monorepo
+- **Architecture Docs**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/architecture
+- **API Protocol**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/api-protocol
+- **Agent Runtime**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/agent-runtime
+- **Product Docs**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/product

 ---

--- a/content/docs/changelog.mdx
+++ b/content/docs/changelog.mdx
@ -11,66 +11,66 @@ Entries are published daily at 23:50 UTC.

 ### ✨ New features

- **SaaS Federation v2 tutorial**: a clean, self-contained walkthrough for platform operators who want to run multi-tenant workspaces from a single control plane. Covers org onboarding via `POST /cp/orgs`, workspace provisioning per tenant, fleet inspection, quota controls, and suspension/teardown. (`molecule-core` [#1700](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1700))
- **External workspace quickstart**: a 5-minute guide to running any HTTP-speaking agent (Python, Node, Go, Rust) on your own machine and having it appear on the canvas alongside platform-provisioned agents. Covers tunnel setup, `POST /workspaces` registration, and a working echo agent. (`molecule-core` [#1760](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1760))
+- **SaaS Federation v2 tutorial**: a clean, self-contained walkthrough for platform operators who want to run multi-tenant workspaces from a single control plane. Covers org onboarding via `POST /cp/orgs`, workspace provisioning per tenant, fleet inspection, quota controls, and suspension/teardown. (`molecule-core` [#1700](https://github.com/Molecule-AI/molecule-core/pull/1700))
+- **External workspace quickstart**: a 5-minute guide to running any HTTP-speaking agent (Python, Node, Go, Rust) on your own machine and having it appear on the canvas alongside platform-provisioned agents. Covers tunnel setup, `POST /workspaces` registration, and a working echo agent. (`molecule-core` [#1760](https://github.com/Molecule-AI/molecule-core/pull/1760))

 ### 🔧 Fixes

- **SSRF guard in SaaS mode**: previously the SSRF protection was blocking all RFC-1918 private IP ranges (`10/8`, `172.16/12`, `192.168/16`) even in SaaS mode — this was a regression from the earlier SaaS-mode work. The fix wires up the `saasMode` flag correctly so private IPs are allowed in SaaS deployments (for internal service calls), while metadata ranges (`169.254/16`), CGNAT, loopback, and link-local remain blocked in every mode. IPv6 ULA (`fd00::/8`) handling is also now correct. (`molecule-core` [#1692](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1692))
- **PUT `/workspaces/:id/files/*path` on SaaS (EC2) workspaces**: fixed a 500 error (`docker not available`) that occurred when saving files from Canvas on SaaS workspaces. The handler now detects non-Docker workspaces via `workspaces.instance_id` and routes writes via EC2 Instance Connect (SSH-backed write with an ephemeral key pair) instead of trying to `docker cp`. (`molecule-core` [#1702](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1702))
+- **SSRF guard in SaaS mode**: previously the SSRF protection was blocking all RFC-1918 private IP ranges (`10/8`, `172.16/12`, `192.168/16`) even in SaaS mode — this was a regression from the earlier SaaS-mode work. The fix wires up the `saasMode` flag correctly so private IPs are allowed in SaaS deployments (for internal service calls), while metadata ranges (`169.254/16`), CGNAT, loopback, and link-local remain blocked in every mode. IPv6 ULA (`fd00::/8`) handling is also now correct. (`molecule-core` [#1692](https://github.com/Molecule-AI/molecule-core/pull/1692))
+- **PUT `/workspaces/:id/files/*path` on SaaS (EC2) workspaces**: fixed a 500 error (`docker not available`) that occurred when saving files from Canvas on SaaS workspaces. The handler now detects non-Docker workspaces via `workspaces.instance_id` and routes writes via EC2 Instance Connect (SSH-backed write with an ephemeral key pair) instead of trying to `docker cp`. (`molecule-core` [#1702](https://github.com/Molecule-AI/molecule-core/pull/1702))

 ### 📚 Docs

- **molecli shell completion**: tab completion for `molecule` CLI in bash, zsh, fish, and PowerShell — covers all subcommands and flags. (`docs` [#79](https://git.moleculesai.app/molecule-ai/docs/pull/79))
- **MCP server structured logging**: `LOG_LEVEL` env var, pino JSON output with AsyncLocalStorage context on every tool call. (`docs` [#78](https://git.moleculesai.app/molecule-ai/docs/pull/78))
+- **molecli shell completion**: tab completion for `molecule` CLI in bash, zsh, fish, and PowerShell — covers all subcommands and flags. (`docs` [#79](https://github.com/Molecule-AI/docs/pull/79))
+- **MCP server structured logging**: `LOG_LEVEL` env var, pino JSON output with AsyncLocalStorage context on every tool call. (`docs` [#78](https://github.com/Molecule-AI/docs/pull/78))

 ### 🧹 Internal

- SaaS Federation v2 tutorial published — clean rewrite of #1613, now with correct HTTP status codes, fleet metrics endpoint, and security model table (`molecule-core` [#1700](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1700)); Files API SSH-backed write path for SaaS EC2 workspaces — fixes 500 on PUT `/workspaces/:id/files/*path` for SaaS users (`molecule-core` [#1702](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1702)); Canvas create-workspace dialog now requires hermes runtime model (`molecule-core` [#1714](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1714)).
- EC2 Instance Connect SSH tutorial published (`molecule-core` [#1617](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1617)); AI agent org-scoped key credential model blog published (`molecule-core` [#1614](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1614)); Phase 30 Day 2 social package ready (`molecule-core` [#1662](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1662)).
+- SaaS Federation v2 tutorial published — clean rewrite of #1613, now with correct HTTP status codes, fleet metrics endpoint, and security model table (`molecule-core` [#1700](https://github.com/Molecule-AI/molecule-core/pull/1700)); Files API SSH-backed write path for SaaS EC2 workspaces — fixes 500 on PUT `/workspaces/:id/files/*path` for SaaS users (`molecule-core` [#1702](https://github.com/Molecule-AI/molecule-core/pull/1702)); Canvas create-workspace dialog now requires hermes runtime model (`molecule-core` [#1714](https://github.com/Molecule-AI/molecule-core/pull/1714)).
+- EC2 Instance Connect SSH tutorial published (`molecule-core` [#1617](https://github.com/Molecule-AI/molecule-core/pull/1617)); AI agent org-scoped key credential model blog published (`molecule-core` [#1614](https://github.com/Molecule-AI/molecule-core/pull/1614)); Phase 30 Day 2 social package ready (`molecule-core` [#1662](https://github.com/Molecule-AI/molecule-core/pull/1662)).

 ### 🌅 Late-day updates (17:30–23:50 UTC)

 #### 🔒 Security

- **Cross-tenant memory poisoning fix** (`molecule-core` [#1791](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1791)): fixes a bug where `commit_memory` with `scope=TEAM` could write to a sibling workspace's memory store under high concurrency. `commit_memory` now validates `target_workspace_id` against the caller's known peer set before any write.
- **CWE-78 shell injection hardening** (`molecule-core` [#1885](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1885)): `shellQuote` now uses `strconv.Quote` for all shell-delimited paths in the EC2 Instance Connect and bastion SSH paths. Defense-in-depth layer hardened; primary protection remains path-validation logic upstream.
+- **Cross-tenant memory poisoning fix** (`molecule-core` [#1791](https://github.com/Molecule-AI/molecule-core/pull/1791)): fixes a bug where `commit_memory` with `scope=TEAM` could write to a sibling workspace's memory store under high concurrency. `commit_memory` now validates `target_workspace_id` against the caller's known peer set before any write.
+- **CWE-78 shell injection hardening** (`molecule-core` [#1885](https://github.com/Molecule-AI/molecule-core/pull/1885)): `shellQuote` now uses `strconv.Quote` for all shell-delimited paths in the EC2 Instance Connect and bastion SSH paths. Defense-in-depth layer hardened; primary protection remains path-validation logic upstream.

 #### ✨ New features

- **A2A priority queue — Phase 1** (`molecule-core` [#1892](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1892)): task dispatch now supports a `priority` field (`low` / `normal` / `high` / `urgent`). High/urgent tasks bypass the normal FIFO queue and are dispatched immediately. Phase 2 (priority inversion deadlock prevention) on the roadmap.
+- **A2A priority queue — Phase 1** (`molecule-core` [#1892](https://github.com/Molecule-AI/molecule-core/pull/1892)): task dispatch now supports a `priority` field (`low` / `normal` / `high` / `urgent`). High/urgent tasks bypass the normal FIFO queue and are dispatched immediately. Phase 2 (priority inversion deadlock prevention) on the roadmap.

 #### 🔧 Fixes

- **A2A queue nil-safe drain** (`molecule-core` [#1893](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1893), [#1896](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1896)): `DequeueTask` no longer panics when the in-memory queue map is uninitialized — graceful empty-result returned instead.
- **Workspaces stuck in `provisioning` after失败** (`molecule-core` [#1794](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1794)): provisioner now transitions workspaces to `failed` state with a descriptive error message instead of leaving them orphaned in `provisioning`.
- **Dedup settings hooks double-fire** (`molecule-core` [#1797](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1797)): the `dedup_settings_hooks` registry now correctly unsubscribes after one fire — eliminates the 3–4× duplicate hook execution observed in CI.
- **Semantic memory search returning stale results** (`molecule-core` [#1778](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1778)): pgvector index now refreshes synchronously on `commit_memory` write instead of on a 5-minute background cycle.
- **pgvector migration race in E2E CI** (`molecule-core` [#1777](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1777)): `CREATE EXTENSION` wrapped in `IF NOT EXISTS` inside a `DO` block — eliminates E2E CI flakiness on fresh DB spin-up.
- **EC2 Instance Connect endpoint not found in us-west-2** (`molecule-core` [#1779](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1779)): Instance Connect endpoint SDK call now falls back gracefully to direct SSM session when the EIC endpoint is unavailable in a region.
- **Canvas topology overlay edge labels clipped** (`molecule-core` [#1802](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1802)): SVG edge labels now respect viewport bounds; labels that would render off-screen are repositioned.
- **Audit trail panel not loading for large workspaces** (`molecule-core` [#1854](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1854)): audit log fetch now uses cursor-based pagination (100 events per page) instead of returning all events at once.
- **Hermes `response_format` not forwarded to MiniMax** (`molecule-core` [#1861](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1861)): `response_format=json_schema` now propagates through the model config passthrough for hermes/MiniMax-M2.7-highspeed workspaces.
- **Memory Inspector panel memory leak** (`molecule-core` [#1871](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1871)): `useMemoryStore` hook now correctly cancels the SSE subscription on panel unmount.
- **Token revocation cache stale-read window** (`molecule-core` [#1888](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1888)): revoked-token invalidation now propagates within 5 s (down from 60 s) — closes the window where a revoked token could still authenticate.
- **TenantGuard same-origin bypass (regression)** (`molecule-core` [#1898](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1898)): fixes a regression introduced in the Phase 33 cloudflare-removal change that re-opened the TenantGuard same-origin bypass for EC2 tenant Canvas deployments.
+- **A2A queue nil-safe drain** (`molecule-core` [#1893](https://github.com/Molecule-AI/molecule-core/pull/1893), [#1896](https://github.com/Molecule-AI/molecule-core/pull/1896)): `DequeueTask` no longer panics when the in-memory queue map is uninitialized — graceful empty-result returned instead.
+- **Workspaces stuck in `provisioning` after失败** (`molecule-core` [#1794](https://github.com/Molecule-AI/molecule-core/pull/1794)): provisioner now transitions workspaces to `failed` state with a descriptive error message instead of leaving them orphaned in `provisioning`.
+- **Dedup settings hooks double-fire** (`molecule-core` [#1797](https://github.com/Molecule-AI/molecule-core/pull/1797)): the `dedup_settings_hooks` registry now correctly unsubscribes after one fire — eliminates the 3–4× duplicate hook execution observed in CI.
+- **Semantic memory search returning stale results** (`molecule-core` [#1778](https://github.com/Molecule-AI/molecule-core/pull/1778)): pgvector index now refreshes synchronously on `commit_memory` write instead of on a 5-minute background cycle.
+- **pgvector migration race in E2E CI** (`molecule-core` [#1777](https://github.com/Molecule-AI/molecule-core/pull/1777)): `CREATE EXTENSION` wrapped in `IF NOT EXISTS` inside a `DO` block — eliminates E2E CI flakiness on fresh DB spin-up.
+- **EC2 Instance Connect endpoint not found in us-west-2** (`molecule-core` [#1779](https://github.com/Molecule-AI/molecule-core/pull/1779)): Instance Connect endpoint SDK call now falls back gracefully to direct SSM session when the EIC endpoint is unavailable in a region.
+- **Canvas topology overlay edge labels clipped** (`molecule-core` [#1802](https://github.com/Molecule-AI/molecule-core/pull/1802)): SVG edge labels now respect viewport bounds; labels that would render off-screen are repositioned.
+- **Audit trail panel not loading for large workspaces** (`molecule-core` [#1854](https://github.com/Molecule-AI/molecule-core/pull/1854)): audit log fetch now uses cursor-based pagination (100 events per page) instead of returning all events at once.
+- **Hermes `response_format` not forwarded to MiniMax** (`molecule-core` [#1861](https://github.com/Molecule-AI/molecule-core/pull/1861)): `response_format=json_schema` now propagates through the model config passthrough for hermes/MiniMax-M2.7-highspeed workspaces.
+- **Memory Inspector panel memory leak** (`molecule-core` [#1871](https://github.com/Molecule-AI/molecule-core/pull/1871)): `useMemoryStore` hook now correctly cancels the SSE subscription on panel unmount.
+- **Token revocation cache stale-read window** (`molecule-core` [#1888](https://github.com/Molecule-AI/molecule-core/pull/1888)): revoked-token invalidation now propagates within 5 s (down from 60 s) — closes the window where a revoked token could still authenticate.
+- **TenantGuard same-origin bypass (regression)** (`molecule-core` [#1898](https://github.com/Molecule-AI/molecule-core/pull/1898)): fixes a regression introduced in the Phase 33 cloudflare-removal change that re-opened the TenantGuard same-origin bypass for EC2 tenant Canvas deployments.

 #### 📚 Docs

- **Chrome DevTools MCP tutorial** (`docs` [#1798](https://git.moleculesai.app/molecule-ai/docs/pull/1798)): hands-on guide for debugging Molecule AI agents in-browser using Chrome's built-in MCP inspector.
- **Phase 34 launch page** (`docs` [#1799](https://git.moleculesai.app/molecule-ai/docs/pull/1799)): public-facing launch collateral for GA scheduled 2026-04-30.
- **Tool Trace demo environment** (`docs` [#1844](https://git.moleculesai.app/molecule-ai/docs/pull/1844)): interactive demo showing the tool trace inspector in action, with sample run data.
- **Enterprise battlecard** (`docs` [#1864](https://git.moleculesai.app/molecule-ai/docs/pull/1864)): competitive positioning doc for sales and enterprise evaluation teams.
+- **Chrome DevTools MCP tutorial** (`docs` [#1798](https://github.com/Molecule-AI/docs/pull/1798)): hands-on guide for debugging Molecule AI agents in-browser using Chrome's built-in MCP inspector.
+- **Phase 34 launch page** (`docs` [#1799](https://github.com/Molecule-AI/docs/pull/1799)): public-facing launch collateral for GA scheduled 2026-04-30.
+- **Tool Trace demo environment** (`docs` [#1844](https://github.com/Molecule-AI/docs/pull/1844)): interactive demo showing the tool trace inspector in action, with sample run data.
+- **Enterprise battlecard** (`docs` [#1864](https://github.com/Molecule-AI/docs/pull/1864)): competitive positioning doc for sales and enterprise evaluation teams.

 #### 🧹 Internal

- `a2a-sdk` hot-pinned to `0.3.x` across all workspace template repos (`molecule-core` [#1890](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1890)); SDK upgrade path documented in `KI-009` (`internal` [#1631](https://git.moleculesai.app/molecule-ai/internal/issues/1631)).
+- `a2a-sdk` hot-pinned to `0.3.x` across all workspace template repos (`molecule-core` [#1890](https://github.com/Molecule-AI/molecule-core/pull/1890)); SDK upgrade path documented in `KI-009` (`internal` [#1631](https://github.com/Molecule-AI/internal/issues/1631)).
 - Phase 34 CI matrix expanded to cover Node 22 and Go 1.24 (`molecule-ci`).

 #### 🔧 Runtime fixes

- **Heartbeat 401 retry** (`molecule-ai-workspace-runtime` [#40](https://git.moleculesai.app/molecule-ai/molecule-ai-workspace-runtime/pull/40)): heartbeat worker now retries with fresh token on 401 before declaring the workspace unreachable — eliminates false `disconnected` status during token rotation.
- **LLM token auto-detect** (`molecule-ai-workspace-runtime` [#38](https://git.moleculesai.app/molecule-ai/molecule-ai-workspace-runtime/pull/38)): hermes runtime now auto-detects `max_tokens` from model context window and request timeout when not explicitly configured.
+- **Heartbeat 401 retry** (`molecule-ai-workspace-runtime` [#40](https://github.com/Molecule-AI/molecule-ai-workspace-runtime/pull/40)): heartbeat worker now retries with fresh token on 401 before declaring the workspace unreachable — eliminates false `disconnected` status during token rotation.
+- **LLM token auto-detect** (`molecule-ai-workspace-runtime` [#38](https://github.com/Molecule-AI/molecule-ai-workspace-runtime/pull/38)): hermes runtime now auto-detects `max_tokens` from model context window and request timeout when not explicitly configured.

 ---

@ -84,7 +84,7 @@ Customer selects `model=minimax/MiniMax-M2.7-highspeed` in Canvas → the model
 API key now propagate correctly into the runtime environment instead of being dropped
 on the floor at provisioning time. Works for hermes workspaces in both hosted SaaS
 and self-hosted EC2 deployments.
-(`molecule-core` [#1685](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1685))
+(`molecule-core` [#1685](https://github.com/Molecule-AI/molecule-core/pull/1685))

 #### EC2 Instance Connect Endpoint — one-click shell from Canvas
 Canvas Terminal tab now uses AWS EC2 Instance Connect Endpoint to open a PTY inside
@ -92,7 +92,7 @@ any workspace EC2 instance — no SSH keys to manage, no IP to copy, no security
 rules to configure. IAM policy gates access, STS pushes a short-lived key that
 auto-expires, and every tunnel open is recorded in CloudTrail.
 See the [EC2 Instance Connect guide](/docs/infra/workspace-terminal).
-(`molecule-core` [#1554](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1554))
+(`molecule-core` [#1554](https://github.com/Molecule-AI/molecule-core/pull/1554))

 #### Phase 33 — Cloudflare Tunnel replaced with direct-connect public IPs
 Cloud-hosted workspaces no longer route through `cloudflared`. Each workspace gets
@ -101,32 +101,32 @@ TLS on port 443. Reduces latency by ~20–40 ms (region-dependent), removes the
 Cloudflare egress cost dependency, and enables direct `curl` debugging without
 the tunnel path.
 See the [migration blog post](/blog/cloudflare-tunnel-migration).
-(`molecule-core` [#1612](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1612))
+(`molecule-core` [#1612](https://github.com/Molecule-AI/molecule-core/pull/1612))

 ### 🔒 Security

 - **F1085 deleteViaEphemeral**: `rm` scope restricted to `/configs` volume only —
  prevents deletion of application code or workspace files if the exec form is
-  exploited. Applied to both `main` and `staging`. (`molecule-core` [#1682](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1682), [#1616](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1616))
+  exploited. Applied to both `main` and `staging`. (`molecule-core` [#1682](https://github.com/Molecule-AI/molecule-core/pull/1682), [#1616](https://github.com/Molecule-AI/molecule-core/pull/1616))

 ### 🔧 Fixes

 - Canvas now fetches the runtime and model dropdown from the `/templates` registry
-  at load time — runtime list stays current without code deploys. (`molecule-core` [#1666](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1666))
+  at load time — runtime list stays current without code deploys. (`molecule-core` [#1666](https://github.com/Molecule-AI/molecule-core/pull/1666))
 - Canvas accessibility: `aria-hidden` correctly applied to decorative SVGs;
-  `MissingKeysModal` now uses correct dialog semantics and manages focus. (`molecule-core` [#1594](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1594))
+  `MissingKeysModal` now uses correct dialog semantics and manages focus. (`molecule-core` [#1594](https://github.com/Molecule-AI/molecule-core/pull/1594))
 - Provisioner pulls workspace template images from GHCR instead of Docker Hub
-  for faster cold starts and reduced third-party dependency. (`molecule-core` [#1624](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1624))
+  for faster cold starts and reduced third-party dependency. (`molecule-core` [#1624](https://github.com/Molecule-AI/molecule-core/pull/1624))
 - Shared runtime heartbeat no longer leaves workspaces in a phantom-busy state after
-  task completion. (`molecule-ai-workspace-runtime` [#37](https://git.moleculesai.app/molecule-ai/molecule-ai-workspace-runtime/pull/37))
+  task completion. (`molecule-ai-workspace-runtime` [#37](https://github.com/Molecule-AI/molecule-ai-workspace-runtime/pull/37))

 ### 📚 Docs

 - **MCP server structured logging**: `LOG_LEVEL` env var (`trace`/`debug`/`info`/`warn`/`error`/`fatal`),
  pino JSON output in production, pretty-print in development, AsyncLocalStorage
-  context on every log entry (tool name, request ID, workspace ID). (`docs` [#78](https://git.moleculesai.app/molecule-ai/docs/pull/78))
+  context on every log entry (tool name, request ID, workspace ID). (`docs` [#78](https://github.com/Molecule-AI/docs/pull/78))
 - **molecli shell completion**: tab completion for `molecule` CLI in bash, zsh, fish,
-  and PowerShell — covers all subcommands and flags. (`docs` [#79](https://git.moleculesai.app/molecule-ai/docs/pull/79))
+  and PowerShell — covers all subcommands and flags. (`docs` [#79](https://github.com/Molecule-AI/docs/pull/79))

 ### 🧹 Internal

--- a/content/docs/external-agents.mdx
+++ b/content/docs/external-agents.mdx
@ -244,24 +244,6 @@ create (POST /workspaces) → online (register) → offline (heartbeat expires)
 - No auto-restart (agent manages its own process)
 - Paused external workspaces skip heartbeat monitoring

-### `removed` status — 410 Gone (#2429)
-
-Once a workspace transitions to `removed`:
-
- **Tokens are revoked immediately**, but the row stays in the DB for audit-trail purposes
- `GET /workspaces/:id` returns **410 Gone** with `{error: "workspace removed", id, removed_at, hint}` so callers fail fast at startup instead of after ~60s of heartbeat 401s
- `DELETE /workspaces/:id` is the canonical removal trigger
- Audit / admin tooling that intentionally wants the legacy 200 + body shape opts in via `GET /workspaces/:id?include_removed=true`
-
-| Caller behavior on a removed workspace | What you should see |
-|---|---|
-| Wheel heartbeat | Logs ERROR after 3 consecutive 401s with re-onboard text |
-| `get_workspace_info` MCP tool | Returns `{"error": "removed", "id", "removed_at", "hint"}` |
-| Channel bridge `getWorkspaceInfo` | Throws `Workspace <id> was deleted on the platform...` |
-| Direct `curl /workspaces/:id` | 410 Gone with the same body shape |
-
-A removed workspace can't be brought back — regenerate a new workspace + token from the canvas **Tokens** tab.
-
 ## Security

 - Bearer token required on all authenticated endpoints
--- a/content/docs/guides/external-workspace-quickstart.md
+++ b/content/docs/guides/external-workspace-quickstart.md
@ -158,7 +158,7 @@ The `id` field is your workspace ID — remember it.
 |---|---|
 | "Failed to send message — agent may be unreachable" | The tenant couldn't POST to your URL. Verify `curl https://<your-tunnel>/health` returns 200 from another machine. |
 | Response takes > 30s | Canvas times out around 30s. Keep initial implementations simple. For long-running work, return a placeholder and use [polling mode](#next-step-polling-mode-preview) (once available). |
-| Agent duplicated in chat | Known canvas bug where WebSocket + HTTP responses both render. Fixed in [molecule-core #1517](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1517). |
+| Agent duplicated in chat | Known canvas bug where WebSocket + HTTP responses both render. Fixed in [molecule-core #1517](https://github.com/Molecule-AI/molecule-core/pull/1517). |
 | Agent replies but canvas shows "Agent unreachable" | Check the tenant can reach your URL. Cloudflare quick tunnels rotate — the URL in your canvas may point at a dead tunnel after restart. |
 | Getting 404 when POSTing to tenant | Add `X-Molecule-Org-Id` header. The tenant's security layer 404s unmatched origin requests by design. |

@ -220,7 +220,7 @@ Push mode (this guide) works today but requires an inbound-reachable URL — whi

 Your agent makes only outbound HTTPS calls to the platform, pulling messages from an inbox queue and posting replies back. Works behind any NAT/firewall, tolerates offline laptops, no tunnel needed.

-See the [design doc](https://git.moleculesai.app/molecule-ai/internal/src/branch/main/product/external-workspaces-polling.md) (internal) and the implementation tracking issue (search `polling+mode` on the [molecule-core issue tracker](https://git.moleculesai.app/molecule-ai/molecule-core/issues)).
+See the [design doc](https://github.com/Molecule-AI/internal/blob/main/product/external-workspaces-polling.md) (internal) and [implementation tracking issue](https://github.com/Molecule-AI/molecule-core/issues?q=polling+mode) once opened.

 ---

@ -260,11 +260,11 @@ If all four pass and canvas still shows your agent as unreachable, see the [remo
 ## Feedback

 This is a new path. Tell us what broke:
- Open an issue: https://git.moleculesai.app/molecule-ai/molecule-core/issues/new?labels=external-workspace
+- Open an issue: https://github.com/Molecule-AI/molecule-core/issues/new?labels=external-workspace
 - Submit a PR improving this doc if something tripped you up — the faster we can make the quickstart, the more developers we bring in

 ---

 *Last updated 2026-04-23*

-(`molecule-core` [#1760](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1760))
+(`molecule-core` [#1760](https://github.com/Molecule-AI/molecule-core/pull/1760))
--- a/content/docs/guides/mcp-server-setup.md
+++ b/content/docs/guides/mcp-server-setup.md
@ -78,7 +78,7 @@ Every log entry automatically includes MCP request context (tool name, request I

 Set `LOG_LEVEL=debug` (level 20) to trace all tool calls and request IDs. Set `LOG_LEVEL=error` (level 50) in CI to suppress informational output.

-See [`molecule-mcp-server` PR #6](https://git.moleculesai.app/molecule-ai/molecule-mcp-server/pull/6) for implementation details.
+See [`molecule-mcp-server` PR #6](https://github.com/Molecule-AI/molecule-mcp-server/pull/6) for implementation details.

 ## Tool Reference

--- a/content/docs/guides/molecli-shell-completion.md
+++ b/content/docs/guides/molecli-shell-completion.md
@ -90,4 +90,4 @@ molecule completion [bash|zsh|fish|powershell]
 - `fish` — Fish shell completions (~/.config/fish/completions)
 - `powershell` — PowerShell completions ($PROFILE)

-See [`molecule-cli` PR #5](https://git.moleculesai.app/molecule-ai/molecule-cli/pull/5) for implementation details.
+See [`molecule-cli` PR #5](https://github.com/Molecule-AI/molecule-cli/pull/5) for implementation details.
--- a/content/docs/guides/remote-workspaces.md
+++ b/content/docs/guides/remote-workspaces.md
@ -148,5 +148,5 @@ The agent appears on the canvas with a **purple REMOTE badge** within seconds. F
 ## Next Steps

 - **[External Agent Registration Guide →](/docs/guides/external-agent-registration)** — full endpoint reference, Python + Node.js examples, troubleshooting
- **[molecule-sdk-python →](https://git.moleculesai.app/molecule-ai/molecule-sdk-python)** — SDK source, `RemoteAgentClient` API docs
- **[SDK Examples →](https://git.moleculesai.app/molecule-ai/molecule-sdk-python/src/branch/main/examples/remote-agent)** — `run.py` demo script, annotated walkthrough
+- **[molecule-sdk-python →](https://github.com/Molecule-AI/molecule-sdk-python)** — SDK source, `RemoteAgentClient` API docs
+- **[SDK Examples →](https://github.com/Molecule-AI/molecule-sdk-python/tree/main/examples/remote-agent)** — `run.py` demo script, annotated walkthrough
--- a/content/docs/guides/skill-catalog.md
+++ b/content/docs/guides/skill-catalog.md
@ -65,7 +65,7 @@ molecule skills install arxiv-research --from community

 Community skills are reviewed by the Molecule AI team before being
 listed. Submit a skill for review by opening a PR against
-`molecule-ai/skills` (repo location TBD post-2026-05-06 GitHub-org-suspension; check the [internal issue tracker](https://git.moleculesai.app/molecule-ai/internal/issues) for the canonical submission path).
+[`molecule-ai/skills`](https://github.com/Molecule-AI/skills).

 ## Installing via config.yaml

@ -171,7 +171,7 @@ molecule skills bundle my-custom-skill --output ./org-templates/my-role/
 ```

 **Publishing to the community:** Open a PR against
-`molecule-ai/skills` (repo location TBD post-2026-05-06 GitHub-org-suspension; check the [internal issue tracker](https://git.moleculesai.app/molecule-ai/internal/issues) for the canonical submission path) with a
+[`molecule-ai/skills`](https://github.com/Molecule-AI/skills) with a
 complete skill package. Community skills are reviewed for security and
 correctness before listing.

--- a/content/docs/hermes.mdx
+++ b/content/docs/hermes.mdx
@ -339,7 +339,7 @@ If you are routing a Gemini model through a key that triggers the compat shim (e
 - [Concepts — Workspaces](/docs/concepts#workspaces)
 - [API Reference — POST /workspaces](/docs/api-reference#post-workspaces)
 - [Google ADK Runtime](/docs/google-adk) — Gemini-native alternative to Hermes for ADK-first workflows
- PR #240: [Phase 2a — native Anthropic dispatch](https://git.moleculesai.app/molecule-ai/molecule-core/pull/240)
- PR #255: [Phase 2b — native Gemini dispatch](https://git.moleculesai.app/molecule-ai/molecule-core/pull/255)
- PR #267: [Phase 2c — multi-turn history on all paths](https://git.moleculesai.app/molecule-ai/molecule-core/pull/267)
- Issue [#513](https://git.moleculesai.app/molecule-ai/molecule-core/issues/513)
+- PR #240: [Phase 2a — native Anthropic dispatch](https://github.com/Molecule-AI/molecule-core/pull/240)
+- PR #255: [Phase 2b — native Gemini dispatch](https://github.com/Molecule-AI/molecule-core/pull/255)
+- PR #267: [Phase 2c — multi-turn history on all paths](https://github.com/Molecule-AI/molecule-core/pull/267)
+- Issue [#513](https://github.com/Molecule-AI/molecule-core/issues/513)
--- a/content/docs/incidents/INCIDENT_LOG.md
+++ b/content/docs/incidents/INCIDENT_LOG.md
@ -165,14 +165,14 @@ ticket if a future revival of this BFG procedure is needed.

 **Step 2 — Clean origin/main:**
 ```bash
-git clone --mirror https://git.moleculesai.app/molecule-ai/molecule-core /tmp/molecule-main-mirror
+git clone --mirror https://github.com/Molecule-AI/molecule-core /tmp/molecule-main-mirror
 java -jar bfgr.jar --replace-text creds.txt --rewrite-not-committed-by-oss --no-blob-protection /tmp/molecule-main-mirror
 cd /tmp/molecule-main-mirror && git push --mirror
 ```

 **Step 3 — Clean origin/staging:**
 ```bash
-git clone --mirror https://git.moleculesai.app/molecule-ai/molecule-core /tmp/molecule-staging-mirror
+git clone --mirror https://github.com/Molecule-AI/molecule-core /tmp/molecule-staging-mirror
 java -jar bfgr.jar --replace-text creds.txt --rewrite-not-committed-by-oss --no-blob-protection /tmp/molecule-staging-mirror
 cd /tmp/molecule-staging-mirror && git push --mirror
 ```
@ -584,7 +584,7 @@ Core-BE — delegated to Dev Lead (A2A failed). Core-BE sub-team: please pick up

 ### Fix PR

-[PR #1336](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1336) filed — `fix(orchestrator): fail-fast if WORKSPACE_ID env var is unset/empty`. Targets staging. Labels: bug, needs-work, area:backend-engineer, area:dev-lead.
+[PR #1336](https://github.com/Molecule-AI/molecule-core/pull/1336) filed — `fix(orchestrator): fail-fast if WORKSPACE_ID env var is unset/empty`. Targets staging. Labels: bug, needs-work, area:backend-engineer, area:dev-lead.

 ---

--- a/content/docs/plugins/agentskills-compat.md
+++ b/content/docs/plugins/agentskills-compat.md
@ -163,11 +163,11 @@ not expose.
 | `molecule-skill-update-docs` | `[claude_code]` | `[claude_code, hermes]` |

 Companion PRs:
- [molecule-ai-plugin-ecc#2](https://git.moleculesai.app/molecule-ai/molecule-ai-plugin-ecc/pull/2)
- [molecule-ai-plugin-superpowers#2](https://git.moleculesai.app/molecule-ai/molecule-ai-plugin-superpowers/pull/2)
- [molecule-ai-plugin-molecule-dev#2](https://git.moleculesai.app/molecule-ai/molecule-ai-plugin-molecule-dev/pull/2)
- [molecule-ai-plugin-molecule-skill-cron-learnings#2](https://git.moleculesai.app/molecule-ai/molecule-ai-plugin-molecule-skill-cron-learnings/pull/2)
- [molecule-ai-plugin-molecule-skill-update-docs#2](https://git.moleculesai.app/molecule-ai/molecule-ai-plugin-molecule-skill-update-docs/pull/2)
+- [molecule-ai-plugin-ecc#2](https://github.com/Molecule-AI/molecule-ai-plugin-ecc/pull/2)
+- [molecule-ai-plugin-superpowers#2](https://github.com/Molecule-AI/molecule-ai-plugin-superpowers/pull/2)
+- [molecule-ai-plugin-molecule-dev#2](https://github.com/Molecule-AI/molecule-ai-plugin-molecule-dev/pull/2)
+- [molecule-ai-plugin-molecule-skill-cron-learnings#2](https://github.com/Molecule-AI/molecule-ai-plugin-molecule-skill-cron-learnings/pull/2)
+- [molecule-ai-plugin-molecule-skill-update-docs#2](https://github.com/Molecule-AI/molecule-ai-plugin-molecule-skill-update-docs/pull/2)

 Security note: Security Auditor was offline at time of change. Self-assessed
 as non-security-impacting — adding `hermes` to a string list in `plugin.yaml`
--- a/content/docs/quickstart.md
+++ b/content/docs/quickstart.md
@ -11,7 +11,7 @@ Get a Molecule AI workspace running in under five minutes.
 ## 1. Install Molecule AI

 ```bash
-git clone https://git.moleculesai.app/molecule-ai/molecule-core.git
+git clone https://github.com/Molecule-AI/molecule-core.git
 cd molecule-core
 docker compose up -d
 ```
@ -78,4 +78,4 @@ Or type `/ask what's our deployment status?` in your connected Discord channel.
 - [Review the REST API reference](/docs/guides/org-api-keys)
 - [Browse all guides](/docs/guides)

-Explore the [Gitea repo](https://git.moleculesai.app/molecule-ai/molecule-core) for self-hosting options, or visit [moleculesai.app](https://moleculesai.app) for the hosted platform.
+Explore the [GitHub repo](https://github.com/Molecule-AI/molecule-core) for self-hosting options, or visit [moleculesai.app](https://moleculesai.app) for the hosted platform.
--- a/content/docs/runtime-mcp.mdx
+++ b/content/docs/runtime-mcp.mdx
@ -272,28 +272,6 @@ Regenerate from the canvas **Tokens** tab — a deleted workspace can't
 be brought back; you'll get a new workspace + token pair. Update your
 MCP config and restart your runtime.

-### `Workspace <id> was deleted on the platform...` from `get_workspace_info`
-
-Since [#2429](https://git.moleculesai.app/molecule-ai/molecule-core/pull/2449),
-`GET /workspaces/:id` returns **410 Gone** (not 200 + `status:"removed"`)
-when the workspace has been deleted. The MCP wheel's `get_workspace_info`
-tool surfaces this as a tailored error message:
-
-```
-Workspace <id> was deleted on the platform at <removed_at>.
-Regenerate workspace + token from the canvas → Tokens tab.
-```
-
-This is the **startup-time** counterpart to the heartbeat-401 escalation
-above. If you see it within seconds of starting your runtime (rather
-than after ~60s of heartbeat failures), the workspace was already gone
-when you connected — regenerate as instructed.
-
-Audit-trail tools that intentionally want to inspect a removed workspace's
-metadata (admin dashboards, "show me deleted workspaces" tooling) can
-opt back into the legacy 200 + body shape via
-`GET /workspaces/<id>?include_removed=true`.
-
 ### `claude mcp list` shows the new config but tools still 401

 `/mcp` reconnect re-spawns the **cached** MCP config from session
--- a/content/docs/security/changelog.md
+++ b/content/docs/security/changelog.md
@ -12,7 +12,7 @@ This page documents security fixes shipped in the Molecule AI platform. Each ent
 ## 2026-04-20 — CWE-22: Path Traversal in `copyFilesToContainer`

 **Severity:** High (CWE-22)
-**PRs:** [#1271](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1271), [#1270](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1270), [#1267](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1267)
+**PRs:** [#1271](https://github.com/Molecule-AI/molecule-core/pull/1271), [#1270](https://github.com/Molecule-AI/molecule-core/pull/1270), [#1267](https://github.com/Molecule-AI/molecule-core/pull/1267)
 **Affected:** `workspace-server/internal/handlers/container_files.go` — `TemplatesHandler.copyFilesToContainer`

 ### Vulnerability
@ -37,7 +37,7 @@ File writes to workspace containers now validate all paths before writing to the
 ## 2026-04-20 — CWE-78: Shell Injection in `deleteViaEphemeral`

 **Severity:** High (CWE-78)
-**PR:** [#1310](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1310)
+**PR:** [#1310](https://github.com/Molecule-AI/molecule-core/pull/1310)
 **Affected:** `workspace-server/internal/handlers/container_files.go` — `TemplatesHandler.deleteViaEphemeral`

 ### Vulnerability
@ -69,9 +69,9 @@ Workspace file deletion operations now use safe argument-passing and validate al
 ## 2026-04-21 — CWE-918: SSRF in MCP / A2A Proxy Endpoints (Updated: Regression Fix)

 **Severity:** High (CWE-918)
-**Original PRs:** [#1274](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1274), [#1302](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1302)
-**Regression Fix PR:** [#1430](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1430)
-**Regression introduced by:** [#1363](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1363)
+**Original PRs:** [#1274](https://github.com/Molecule-AI/molecule-core/pull/1274), [#1302](https://github.com/Molecule-AI/molecule-core/pull/1302)
+**Regression Fix PR:** [#1430](https://github.com/Molecule-AI/molecule-core/pull/1430)
+**Regression introduced by:** [#1363](https://github.com/Molecule-AI/molecule-core/pull/1363)
 **Affected:** `workspace-server/internal/handlers/mcp.go` — `isSafeURL`, `isPrivateOrMetadataIP`; `workspace-server/internal/handlers/a2a_proxy.go`; `workspace-server/internal/handlers/a2a_proxy_helpers.go`

 ### Vulnerability
@ -105,9 +105,9 @@ In **SaaS mode** (`saasMode()` returns true), cross-EC2 traffic to RFC-1918 addr

 ### Regression (2026-04-21)

-PR [#1363](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1363) (handler refactor) moved `isPrivateOrMetadataIP` into `a2a_proxy_helpers.go` but kept a **pre-SaaS version** that unconditionally blocked RFC-1918 addresses, breaking cross-EC2 communication in SaaS. The old version also **returned `false` for all IPv6 inputs**, fully bypassing SSRF protection for IPv6 targets.
+PR [#1363](https://github.com/Molecule-AI/molecule-core/pull/1363) (handler refactor) moved `isPrivateOrMetadataIP` into `a2a_proxy_helpers.go` but kept a **pre-SaaS version** that unconditionally blocked RFC-1918 addresses, breaking cross-EC2 communication in SaaS. The old version also **returned `false` for all IPv6 inputs**, fully bypassing SSRF protection for IPv6 targets.

-PR [#1430](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1430) restores the correct SaaS-gated logic and adds proper IPv6 coverage to the A2A proxy path.
+PR [#1430](https://github.com/Molecule-AI/molecule-core/pull/1430) restores the correct SaaS-gated logic and adds proper IPv6 coverage to the A2A proxy path.

 ### User-facing summary

@ -118,7 +118,7 @@ Platform outbound requests from workspaces (MCP tool calls, A2A proxy routing) v
 ## 2026-04-21 — Audit Ledger HMAC Chain Guard

 **Severity:** Low (denial-of-service / data integrity)
-**PRs:** [#1339](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1339), [#1352](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1352), [#1354](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1354) (backport to `main`)
+**PRs:** [#1339](https://github.com/Molecule-AI/molecule-core/pull/1339), [#1352](https://github.com/Molecule-AI/molecule-core/pull/1352), [#1354](https://github.com/Molecule-AI/molecule-core/pull/1354) (backport to `main`)
 **Affected:** `workspace-server/internal/handlers/audit.go`

 ### Vulnerability
@ -144,7 +144,7 @@ Audit chain verification now handles short or malformed HMAC values gracefully,
 ## 2026-04-21 — Credential Scrub: `err.Error()` Leak Prevention

 **Severity:** Medium (information disclosure)
-**PRs:** [#1282](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1282), [#1355](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1355), [#1359](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1359)
+**PRs:** [#1282](https://github.com/Molecule-AI/molecule-core/pull/1282), [#1355](https://github.com/Molecule-AI/molecule-core/pull/1355), [#1359](https://github.com/Molecule-AI/molecule-core/pull/1359)
 **Affected:** `workspace-server/internal/handlers/plugins_install_pipeline.go`, `workspace-server/internal/handlers/workspace_provision.go`, `content/docs/incidents/INCIDENT_LOG.md`

 ### Vulnerability
--- a/content/docs/self-hosting.mdx
+++ b/content/docs/self-hosting.mdx
@ -17,7 +17,7 @@ description: Run the full Molecule AI stack on your own infrastructure.
 The fastest way to get Molecule AI running locally:

 ```bash
-git clone https://git.moleculesai.app/molecule-ai/molecule-core.git
+git clone https://github.com/Molecule-AI/molecule-core.git
 cd molecule-core
 ./scripts/dev-start.sh
 # Canvas: http://localhost:3000
--- a/content/docs/tutorials/fly-machines-provisioner.md
+++ b/content/docs/tutorials/fly-machines-provisioner.md
@ -88,8 +88,8 @@ Fly Machines start in milliseconds and run in 35+ regions. Provisioning agent wo

 ## Related

- PR #501: [feat(platform): Fly Machines provisioner](https://git.moleculesai.app/molecule-ai/molecule-core/pull/501)
- PR #481: [feat(ci): deploy to Fly after image push](https://git.moleculesai.app/molecule-ai/molecule-core/pull/481)
+- PR #501: [feat(platform): Fly Machines provisioner](https://github.com/Molecule-AI/molecule-core/pull/501)
+- PR #481: [feat(ci): deploy to Fly after image push](https://github.com/Molecule-AI/molecule-core/pull/481)
 - [Fly Machines API docs](https://fly.io/docs/machines/api/)
 - [Platform API reference](../api-reference.md)
- Issue [#525](https://git.moleculesai.app/molecule-ai/molecule-core/issues/525)
+- Issue [#525](https://github.com/Molecule-AI/molecule-core/issues/525)
--- a/content/docs/tutorials/gemini-cli-runtime.md
+++ b/content/docs/tutorials/gemini-cli-runtime.md
@ -64,6 +64,6 @@ The real power surfaces when you mix runtimes on the same Molecule AI tenant. Yo

 ## Related

- PR #379: [feat(adapters): add gemini-cli runtime adapter](https://git.moleculesai.app/molecule-ai/molecule-core/pull/379)
+- PR #379: [feat(adapters): add gemini-cli runtime adapter](https://github.com/Molecule-AI/molecule-core/pull/379)
 - [Multi-provider Hermes docs](../architecture/hermes.md)
 - [Workspace runtimes reference](../reference/runtimes.md)
--- a/content/docs/tutorials/google-adk-runtime.md
+++ b/content/docs/tutorials/google-adk-runtime.md
@ -71,7 +71,7 @@ ADK workspaces participate in the same A2A network as Claude Code, Gemini CLI, H

 ## Related

- PR #550: [feat(adapters): add google-adk runtime adapter](https://git.moleculesai.app/molecule-ai/molecule-core/pull/550)
+- PR #550: [feat(adapters): add google-adk runtime adapter](https://github.com/Molecule-AI/molecule-core/pull/550)
 - [Google ADK (adk-python)](https://github.com/google/adk-python)
 - [Gemini CLI runtime tutorial](./gemini-cli-runtime.md)
 - [Platform API reference](../api-reference.md)
--- a/content/docs/tutorials/hermes-multi-provider-dispatch.md
+++ b/content/docs/tutorials/hermes-multi-provider-dispatch.md
@ -179,9 +179,9 @@ What is on the roadmap for Phase 2d (not yet shipped):

 ## Related

- PR #240: [Phase 2a — native Anthropic dispatch](https://git.moleculesai.app/molecule-ai/molecule-core/pull/240)
- PR #255: [Phase 2b — native Gemini dispatch](https://git.moleculesai.app/molecule-ai/molecule-core/pull/255)
- PR #267: [Phase 2c — multi-turn history on all paths](https://git.moleculesai.app/molecule-ai/molecule-core/pull/267)
+- PR #240: [Phase 2a — native Anthropic dispatch](https://github.com/Molecule-AI/molecule-core/pull/240)
+- PR #255: [Phase 2b — native Gemini dispatch](https://github.com/Molecule-AI/molecule-core/pull/255)
+- PR #267: [Phase 2c — multi-turn history on all paths](https://github.com/Molecule-AI/molecule-core/pull/267)
 - [Hermes adapter design](../adapters/hermes-adapter-design.md)
 - [Platform API reference](../api-reference.md)
- Issue [#513](https://git.moleculesai.app/molecule-ai/molecule-core/issues/513)
+- Issue [#513](https://github.com/Molecule-AI/molecule-core/issues/513)
--- a/content/docs/tutorials/lark-feishu-channel.md
+++ b/content/docs/tutorials/lark-feishu-channel.md
@ -93,6 +93,6 @@ Molecule AI canvas without code changes.

 ## Related

- PR #480: [feat(channels): Lark / Feishu channel adapter](https://git.moleculesai.app/molecule-ai/molecule-core/pull/480)
+- PR #480: [feat(channels): Lark / Feishu channel adapter](https://github.com/Molecule-AI/molecule-core/pull/480)
 - [Social channels architecture](../agent-runtime/social-channels.md)
 - [Channel adapter reference](../api-reference.md#channels)
--- a/content/docs/tutorials/saas-federation.md
+++ b/content/docs/tutorials/saas-federation.md
@ -246,4 +246,4 @@ For the API reference, see [`docs/api-reference`](/docs/api-reference) — the `

 *SaaS federation is available for all Molecule AI platform operators. Contact the Molecule AI team to enable federation on your control plane.*

-(`molecule-core` [#1700](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1700))
+(`molecule-core` [#1700](https://github.com/Molecule-AI/molecule-core/pull/1700))
--- a/content/docs/tutorials/saas-file-writes-eic.md
+++ b/content/docs/tutorials/saas-file-writes-eic.md
@ -145,7 +145,7 @@ Key push + tunnel + write took longer than 30 s. Common causes: slow AWS EIC in

 ## Source PR

-PR [#1702](https://git.moleculesai.app/molecule-ai/molecule-core/pull/1702) — `feat(files-api): SSH-backed write for SaaS workspaces (fixes 500 docker not available)`
+PR [#1702](https://github.com/Molecule-AI/molecule-core/pull/1702) — `feat(files-api): SSH-backed write for SaaS workspaces (fixes 500 docker not available)`

 Key files in `molecule-core`:
 - `workspace-server/internal/handlers/template_files_eic.go` — EIC write logic
--- a/docs/marketing/blog/2026-04-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md
+++ b/docs/marketing/blog/2026-04-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md
@ -237,4 +237,4 @@ Once your agent is connected to MCP, it stops being a chatbot with a scrollable

 ---

-*Have questions or want to share what you're building with MCP? File an issue with the `enhancement` label on the [molecule-core issue tracker](https://git.moleculesai.app/molecule-ai/molecule-core/issues).*
+*Have questions or want to share what you're building with MCP? Open a discussion on [GitHub Discussions](https://github.com/Molecule-AI/molecule-core/discussions) or file an issue with the `enhancement` label.*