From d05d92b6661efa3d47c73e965072418ca7897dc1 Mon Sep 17 00:00:00 2001 From: documentation-specialist Date: Thu, 7 May 2026 00:37:12 -0700 Subject: [PATCH 1/2] docs(install): migrate active doc links + git clone URLs to Gitea (#37) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit 7 actionable edits across 5 files. The other 90 hits are historical PR/issue cross-refs in changelog.mdx — leave per Q3 (audit trail). | File | Line | Change | |------|------|--------| | app/(home)/page.tsx | 21 | molecule-monorepo (404 on Gitea) → molecule-core (renamed). 'View on GitHub' → 'View on Gitea'. | | content/docs/quickstart.md | 14 | git clone github.com/Molecule-AI/molecule-core → git.moleculesai.app/molecule-ai/molecule-core | | content/docs/quickstart.md | 81 | 'GitHub repo' link → 'Gitea repo' | | content/docs/self-hosting.mdx | 20 | git clone (same as above) | | content/docs/architecture.mdx | 141 | 'github.com/Molecule-AI/molecule-cli' → 'git.moleculesai.app/molecule-ai/molecule-cli' (public repo) | | content/docs/architecture/molecule-technical-doc.md | 7 | molecule-monorepo doc-scan reference → molecule-core (with rename note) | | content/docs/architecture/molecule-technical-doc.md | 1156-1160 | Footer links section: GitHub → Gitea, /tree/ → /src/branch/ | LEFT AS-IS (per Q3 + B3 in #38): - changelog.mdx historical PR/issue cross-refs (90 hits — audit trail) - changelog.mdx:349 'Documentation Specialist' link to github.com/Molecule-AI (meta-narrative author attribution; org-page is dead but the historical attribution is fine) Refs: molecule-ai/internal#37, molecule-ai/internal#38 --- app/(home)/page.tsx | 4 ++-- content/docs/architecture.mdx | 2 +- content/docs/architecture/molecule-technical-doc.md | 12 ++++++------ content/docs/quickstart.md | 4 ++-- content/docs/self-hosting.mdx | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-) diff --git a/app/(home)/page.tsx b/app/(home)/page.tsx index f5a4fb9..764f16f 100644 --- a/app/(home)/page.tsx +++ b/app/(home)/page.tsx @@ -18,10 +18,10 @@ export default function HomePage() { Read the docs - View on GitHub + View on Gitea diff --git a/content/docs/architecture.mdx b/content/docs/architecture.mdx index 16b05c9..3fd0b33 100644 --- a/content/docs/architecture.mdx +++ b/content/docs/architecture.mdx @@ -138,7 +138,7 @@ These controls complement the platform-level secret redaction described in the [ **Stack:** Go / Bubbletea + Lipgloss -A terminal UI dashboard for real-time workspace monitoring, event log streaming, health overview, and delete/filter operations. Reads `MOLECLI_URL` (default `http://localhost:8080`) to locate the platform. Now published as a standalone repo at `github.com/Molecule-AI/molecule-cli`. +A terminal UI dashboard for real-time workspace monitoring, event log streaming, health overview, and delete/filter operations. Reads `MOLECLI_URL` (default `http://localhost:8080`) to locate the platform. Now published as a standalone repo at `git.moleculesai.app/molecule-ai/molecule-cli`. --- diff --git a/content/docs/architecture/molecule-technical-doc.md b/content/docs/architecture/molecule-technical-doc.md index ecf65c7..3a7ed27 100644 --- a/content/docs/architecture/molecule-technical-doc.md +++ b/content/docs/architecture/molecule-technical-doc.md @@ -4,7 +4,7 @@ title: "Molecule AI — Comprehensive Technical Documentation" # Molecule AI — Comprehensive Technical Documentation > Definitive technical reference for the Molecule AI Agent Team platform. -> Based on a full non-invasive scan of the [molecule-monorepo](https://github.com/Molecule-AI/molecule-monorepo) repository. +> Based on a full non-invasive scan of the [molecule-core](https://git.moleculesai.app/molecule-ai/molecule-core) repository (formerly `molecule-monorepo`, renamed during the post-2026-05-06 GitHub-org-suspension recovery). --- @@ -1153,11 +1153,11 @@ Molecule AI's workspace abstraction is **runtime-agnostic by design**. A workspa ## Links -- **GitHub**: https://github.com/Molecule-AI/molecule-monorepo -- **Architecture Docs**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/architecture -- **API Protocol**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/api-protocol -- **Agent Runtime**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/agent-runtime -- **Product Docs**: https://github.com/Molecule-AI/molecule-monorepo/tree/main/docs/product +- **Gitea**: https://git.moleculesai.app/molecule-ai/molecule-core +- **Architecture Docs**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/architecture +- **API Protocol**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/api-protocol +- **Agent Runtime**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/agent-runtime +- **Product Docs**: https://git.moleculesai.app/molecule-ai/molecule-core/src/branch/main/docs/product --- diff --git a/content/docs/quickstart.md b/content/docs/quickstart.md index a8b6f15..9cfee1d 100644 --- a/content/docs/quickstart.md +++ b/content/docs/quickstart.md @@ -11,7 +11,7 @@ Get a Molecule AI workspace running in under five minutes. ## 1. Install Molecule AI ```bash -git clone https://github.com/Molecule-AI/molecule-core.git +git clone https://git.moleculesai.app/molecule-ai/molecule-core.git cd molecule-core docker compose up -d ``` @@ -78,4 +78,4 @@ Or type `/ask what's our deployment status?` in your connected Discord channel. - [Review the REST API reference](/docs/guides/org-api-keys) - [Browse all guides](/docs/guides) -Explore the [GitHub repo](https://github.com/Molecule-AI/molecule-core) for self-hosting options, or visit [moleculesai.app](https://moleculesai.app) for the hosted platform. +Explore the [Gitea repo](https://git.moleculesai.app/molecule-ai/molecule-core) for self-hosting options, or visit [moleculesai.app](https://moleculesai.app) for the hosted platform. diff --git a/content/docs/self-hosting.mdx b/content/docs/self-hosting.mdx index 4b1f813..d9dde0f 100644 --- a/content/docs/self-hosting.mdx +++ b/content/docs/self-hosting.mdx @@ -17,7 +17,7 @@ description: Run the full Molecule AI stack on your own infrastructure. The fastest way to get Molecule AI running locally: ```bash -git clone https://github.com/Molecule-AI/molecule-core.git +git clone https://git.moleculesai.app/molecule-ai/molecule-core.git cd molecule-core ./scripts/dev-start.sh # Canvas: http://localhost:3000 From a52ed96143e57a5817043cfa81e602640c1defd6 Mon Sep 17 00:00:00 2001 From: documentation-specialist Date: Thu, 7 May 2026 00:38:40 -0700 Subject: [PATCH 2/2] docs(install): catch additional active doc-link refs in guides + blog (#37 follow-up) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Follow-up to commit d05d92b: my first sweep filtered out only issues/pull/commit/releases URLs but missed several /tree//... and active-mention paths in guides/. Additional 5 edits across 4 files: - guides/remote-workspaces.md:151,152 — molecule-sdk-python links (PUBLIC) migrated to Gitea; /tree/main → /src/branch/main path-shape. - guides/external-workspace-quickstart.md:223 — design-doc link in internal/ + tracking-issue link to molecule-core/issues. Internal is PRIVATE; logged-in users see it; better than stale github 404. - guides/skill-catalog.md:68,174 — molecule-ai/skills repo doesn't exist on Gitea (404). Replaced with placeholder note pointing at internal issue tracker for canonical submission path until skills repo is recreated/located. Filed as implicit parked follow-up. - docs/marketing/blog/2026-04-20-...mcp.md:240 — GitHub Discussions link (Discussions don't have a Gitea equivalent today). Replaced with issue-tracker link. Still LEFT AS-IS (per Q3): 90 historical PR/issue cross-refs in changelog.mdx, plus changelog.mdx:349 'Documentation Specialist' meta-narrative author attribution link, plus 2 incident-narrative git clone --mirror commands in INCIDENT_LOG.md (those describe a historical incident response, not active install instructions). Refs: molecule-ai/internal#37, molecule-ai/internal#38 --- content/docs/guides/external-workspace-quickstart.md | 2 +- content/docs/guides/remote-workspaces.md | 4 ++-- content/docs/guides/skill-catalog.md | 4 ++-- ...-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md | 2 +- 4 files changed, 6 insertions(+), 6 deletions(-) diff --git a/content/docs/guides/external-workspace-quickstart.md b/content/docs/guides/external-workspace-quickstart.md index e3c500d..b7ee691 100644 --- a/content/docs/guides/external-workspace-quickstart.md +++ b/content/docs/guides/external-workspace-quickstart.md @@ -220,7 +220,7 @@ Push mode (this guide) works today but requires an inbound-reachable URL — whi Your agent makes only outbound HTTPS calls to the platform, pulling messages from an inbox queue and posting replies back. Works behind any NAT/firewall, tolerates offline laptops, no tunnel needed. -See the [design doc](https://github.com/Molecule-AI/internal/blob/main/product/external-workspaces-polling.md) (internal) and [implementation tracking issue](https://github.com/Molecule-AI/molecule-core/issues?q=polling+mode) once opened. +See the [design doc](https://git.moleculesai.app/molecule-ai/internal/src/branch/main/product/external-workspaces-polling.md) (internal) and the implementation tracking issue (search `polling+mode` on the [molecule-core issue tracker](https://git.moleculesai.app/molecule-ai/molecule-core/issues)). --- diff --git a/content/docs/guides/remote-workspaces.md b/content/docs/guides/remote-workspaces.md index e62f428..ed34a4f 100644 --- a/content/docs/guides/remote-workspaces.md +++ b/content/docs/guides/remote-workspaces.md @@ -148,5 +148,5 @@ The agent appears on the canvas with a **purple REMOTE badge** within seconds. F ## Next Steps - **[External Agent Registration Guide →](/docs/guides/external-agent-registration)** — full endpoint reference, Python + Node.js examples, troubleshooting -- **[molecule-sdk-python →](https://github.com/Molecule-AI/molecule-sdk-python)** — SDK source, `RemoteAgentClient` API docs -- **[SDK Examples →](https://github.com/Molecule-AI/molecule-sdk-python/tree/main/examples/remote-agent)** — `run.py` demo script, annotated walkthrough +- **[molecule-sdk-python →](https://git.moleculesai.app/molecule-ai/molecule-sdk-python)** — SDK source, `RemoteAgentClient` API docs +- **[SDK Examples →](https://git.moleculesai.app/molecule-ai/molecule-sdk-python/src/branch/main/examples/remote-agent)** — `run.py` demo script, annotated walkthrough diff --git a/content/docs/guides/skill-catalog.md b/content/docs/guides/skill-catalog.md index 10b8417..6a2f982 100644 --- a/content/docs/guides/skill-catalog.md +++ b/content/docs/guides/skill-catalog.md @@ -65,7 +65,7 @@ molecule skills install arxiv-research --from community Community skills are reviewed by the Molecule AI team before being listed. Submit a skill for review by opening a PR against -[`molecule-ai/skills`](https://github.com/Molecule-AI/skills). +`molecule-ai/skills` (repo location TBD post-2026-05-06 GitHub-org-suspension; check the [internal issue tracker](https://git.moleculesai.app/molecule-ai/internal/issues) for the canonical submission path). ## Installing via config.yaml @@ -171,7 +171,7 @@ molecule skills bundle my-custom-skill --output ./org-templates/my-role/ ``` **Publishing to the community:** Open a PR against -[`molecule-ai/skills`](https://github.com/Molecule-AI/skills) with a +`molecule-ai/skills` (repo location TBD post-2026-05-06 GitHub-org-suspension; check the [internal issue tracker](https://git.moleculesai.app/molecule-ai/internal/issues) for the canonical submission path) with a complete skill package. Community skills are reviewed for security and correctness before listing. diff --git a/docs/marketing/blog/2026-04-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md b/docs/marketing/blog/2026-04-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md index f8ee1cf..18bc08b 100644 --- a/docs/marketing/blog/2026-04-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md +++ b/docs/marketing/blog/2026-04-20-how-to-add-browser-automation-to-ai-agents-with-mcp.md @@ -237,4 +237,4 @@ Once your agent is connected to MCP, it stops being a chatbot with a scrollable --- -*Have questions or want to share what you're building with MCP? Open a discussion on [GitHub Discussions](https://github.com/Molecule-AI/molecule-core/discussions) or file an issue with the `enhancement` label.* \ No newline at end of file +*Have questions or want to share what you're building with MCP? File an issue with the `enhancement` label on the [molecule-core issue tracker](https://git.moleculesai.app/molecule-ai/molecule-core/issues).* \ No newline at end of file