molecule-core/docs
Hongming Wang 7224276de0 feat: register codex runtime + runtime native-MCP design docs
Adds the OpenAI Codex CLI as a Molecule workspace runtime and lands
the design docs that drove the runtime native-MCP push parity work
across claude-code, hermes, openclaw, and codex.

manifest.json:
- Adds `codex` workspace_template entry pointing at the new
  Molecule-AI/molecule-ai-workspace-template-codex repo (initial
  commit landed there in parallel; 14 files / 1411 LOC). The
  workspace-server runtime registry already had `codex` in its
  fallback set — this entry makes it manifest-reachable in prod.

docs/integrations/:
- runtime-native-mcp-status.md — index across all four runtime streams
- codex-app-server-adapter-design.md — full design including v2 RPC
  sequence, executor skeleton, schema-vs-runtime drift findings
  (real codex 0.72 returns thread.id, schema says thread.threadId)
- hermes-platform-plugins-upstream-pr.md — pre-submission draft of
  the hermes-agent upstream PR

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-02 02:21:11 -07:00
..
adapters chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
adr chore: move platform/docs/adr/ to root docs/adr/ — single docs location 2026-04-18 00:12:47 -07:00
agent-runtime docs(cli-runtime): use module-form invocation, drop dead shell-alias claim 2026-04-27 12:27:50 -07:00
api-protocol chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
architecture docs(internal): refresh runtime-package mirror policy + parity matrix + dead-link fix 2026-05-01 20:06:06 -07:00
assets docs(blog + assets): MCP Server List blog post + OG image — v2 from staging 2026-04-23 22:48:15 +00:00
blog Merge pull request #1923 from Molecule-AI/docs/mcp-server-list-og-v2 2026-04-24 07:05:54 +00:00
development docs(security): document the KMS-rooted custody chain for SECRETS_ENCRYPTION_KEY 2026-04-26 11:29:16 -07:00
devrel/demos/tool-trace-platform-instructions docs(devrel): add Tool Trace + Platform Instructions demo (#1844) 2026-04-23 19:16:27 +00:00
engineering docs: testing strategy + PR hygiene + backend parity matrix + boot-event postmortem (#1824) 2026-04-23 19:59:38 +00:00
frontend initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
guides docs(guides): add 5-minute external-workspace quickstart for DevRel 2026-04-23 06:13:16 +00:00
incidents docs(security): move sensitive runbooks to private internal repo 2026-04-22 22:39:23 +00:00
infra docs(internal): refresh runtime-package mirror policy + parity matrix + dead-link fix 2026-05-01 20:06:06 -07:00
integrations feat: register codex runtime + runtime native-MCP design docs 2026-05-02 02:21:11 -07:00
pages/api docs(api-ref): add workspace file copy API reference (#1281) 2026-04-21 05:37:55 +00:00
plugins chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
tutorials docs(saas-federation): fix workspace-limit response code (409, not 402) (#1754) 2026-04-27 04:30:46 -07:00
.gitignore initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
api-reference.md fix(docs): update architecture + API reference paths for workspace-server rename 2026-04-18 01:25:21 -07:00
ecosystem-watch.md docs: update ecosystem-watch date to 2026-04-27 2026-04-27 14:39:35 -07:00
glossary.md docs(glossary): add GitHub Awesome Copilot disambiguation section 2026-04-17 16:27:41 +00:00
index.md docs: add Remote Agents feature + Phase 30 blog links to docs index 2026-04-21 03:51:52 +00:00
internal-content-policy.md chore: remove internal content + add hard CI gate (CEO directive 2026-04-23) 2026-04-23 16:58:28 -07:00
quickstart.md feat(dev-start): true single-command spinup — infra + templates + auth posture 2026-04-27 16:29:37 -07:00
README.md chore: structural cleanup — dead dirs, moves, gitignore 2026-04-13 14:06:52 -07:00
workspace-runtime-package.md docs(internal): refresh runtime-package mirror policy + parity matrix + dead-link fix 2026-05-01 20:06:06 -07:00

docs/

This directory serves two purposes:

  1. Markdown content — everything under architecture/, agent-runtime/, api-protocol/, development/, frontend/, plugins/, product/, etc. This is what agents and humans read.
  2. VitePress site.vitepress/config.ts, package.json, package-lock.json. These drive the rendered documentation site.

Local preview

cd docs
npm install
npm run dev      # preview on http://localhost:5173
npm run build    # static build to docs/.vitepress/dist/

Conventions

  • New top-level docs must be linked from PLAN.md, README.md, and CLAUDE.md — otherwise agents can't find them (see .claude/ memory feedback_cross_reference_docs.md).
  • edit-history/YYYY-MM-DD.md is append-only log of significant changes; don't rewrite history.
  • archive/ holds one-shot analyses and retired docs — kept for context but not maintained.

Why site tooling lives here (not in docs-site/)

VitePress expects its config at <root>/.vitepress/config.ts where <root> is also the content directory. Splitting tooling into a sibling docs-site/ would require a non-trivial srcDir shim and break relative links in .vitepress/config.ts. Keeping both together is the pragmatic choice; this README is the tradeoff ledger.