molecule-core/docs
Hongming Wang 232e90248b docs: session retrospective + Phase 35 hardening plan
Full retrospective of the 2026-04-16/17 SaaS buildout session:
- What was done (infra migration, 40+ PRs, 5 issues, 4 docs, 1 new repo)
- What should NOT have been changed (wildcard DNS churn, AdminAuth shortcut)
- Security concerns (8 items, 2 CRITICAL)
- Workflow gaps (registration, boot time, CI)
- Tests needed (automated + manual + security)

Phase 35 in PLAN.md covers production hardening follow-ups.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 20:08:39 -07:00
..
.vitepress initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
adapters initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
agent-runtime initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
api-protocol docs(platform-api): Breaking Changes section for PR #701 auth + validation 2026-04-17 12:44:11 +00:00
architecture docs: tenant image upgrade strategies (Options A/B/C) 2026-04-17 11:59:15 -07:00
assets/branding chore: replace brand icon and add HANDOFF.md 2026-04-13 13:03:40 -07:00
blog/2026-04-17-deploy-anywhere docs(blog): deploy anywhere — Fly Machines + control plane provisioners 2026-04-17 00:38:06 +00:00
demo initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
development docs: correct stale test counts in PR #9 2026-04-13 17:51:12 -07:00
edit-history docs: sync CLAUDE.md + PLAN.md + edit-history with 2026-04-15 overnight sweep 2026-04-15 12:16:24 -07:00
frontend initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
guides feat(platform): token management API + MCP setup + external agent guide 2026-04-16 08:37:42 -07:00
integrations fix(opencode): update URL example in opencode.md + add WORKSPACE_ID env var 2026-04-17 22:06:37 +00:00
marketing docs(competitors): downgrade Paperclip threat HIGH → MEDIUM (#581) 2026-04-17 00:45:53 +00:00
plugins initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
product initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
research initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
retrospectives docs: session retrospective + Phase 35 hardening plan 2026-04-17 20:08:39 -07:00
runbooks Merge pull request #259 from Molecule-AI/docs/saas-secrets-resend 2026-04-15 13:49:34 -07:00
security docs(security): SAFE-MCP audit report 2026-04-17 (issue #747) 2026-04-17 18:54:08 +00:00
spikes chore: move spike/ → docs/spikes/ — keep explorations out of repo root 2026-04-17 16:09:12 -07:00
tutorials Merge pull request #578 from Molecule-AI/docs/devrel-feat-525 2026-04-16 18:47:17 -07:00
.gitignore initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
api-reference.md initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
architecture.md initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
ecosystem-research-outcomes.md initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
ecosystem-watch.md chore(eco-watch): smolagents WATCH → BUILD (threshold override, PM auth) 2026-04-18 00:16:39 +00:00
glossary.md docs(glossary): add GitHub Awesome Copilot disambiguation section 2026-04-17 16:27:41 +00:00
index.md initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
known-issues.md initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
package-lock.json initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
package.json initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
quickstart.md initial commit — Molecule AI platform 2026-04-13 11:55:37 -07:00
README.md chore: structural cleanup — dead dirs, moves, gitignore 2026-04-13 14:06:52 -07:00
remote-workspaces-readiness.md docs: update remote-workspaces-readiness for Phase 30.1 shipped status 2026-04-16 08:49:07 -07:00
workspace-runtime-package.md chore: extract workspace runtime to PyPI + move adapter Dockerfiles to template repos 2026-04-16 04:33:10 -07:00

docs/

This directory serves two purposes:

  1. Markdown content — everything under architecture/, agent-runtime/, api-protocol/, development/, frontend/, plugins/, product/, etc. This is what agents and humans read.
  2. VitePress site.vitepress/config.ts, package.json, package-lock.json. These drive the rendered documentation site.

Local preview

cd docs
npm install
npm run dev      # preview on http://localhost:5173
npm run build    # static build to docs/.vitepress/dist/

Conventions

  • New top-level docs must be linked from PLAN.md, README.md, and CLAUDE.md — otherwise agents can't find them (see .claude/ memory feedback_cross_reference_docs.md).
  • edit-history/YYYY-MM-DD.md is append-only log of significant changes; don't rewrite history.
  • archive/ holds one-shot analyses and retired docs — kept for context but not maintained.

Why site tooling lives here (not in docs-site/)

VitePress expects its config at <root>/.vitepress/config.ts where <root> is also the content directory. Splitting tooling into a sibling docs-site/ would require a non-trivial srcDir shim and break relative links in .vitepress/config.ts. Keeping both together is the pragmatic choice; this README is the tradeoff ledger.