molecule-core/workspace
Hongming Wang 0cdbc2c4f6 chore(deps): batch dep bumps — 11 safe upgrades from 2026-04-28 dependabot wave
Consolidates 11 of the 17 open Dependabot PRs (#2215, #2217, #2219-#2225,
#2227, #2229) into one PR. Every entry is a patch / minor / floor bump
where the impact surface is small and CI carries the proof.

Same pattern as the 2026-04-15 batch.

Go (workspace-server/go.mod + go.sum, regenerated via `go mod tidy`):
  - golang.org/x/crypto                    0.49.0  → 0.50.0   (#2225)
  - github.com/golang-jwt/jwt/v5           5.2.2   → 5.3.1    (#2222)
  - github.com/gin-contrib/cors            1.7.2   → 1.7.7    (#2220)
  - github.com/docker/go-connections       0.6.0   → 0.7.0    (#2223)
  - github.com/redis/go-redis/v9           9.7.3   → 9.19.0   (#2217)

Python floor bumps (workspace/requirements.txt; current pip-resolved
versions don't change unless they happen to be below the new floor):
  - httpx                                  >=0.27  → >=0.28.1 (#2221)
  - uvicorn                                >=0.30  → >=0.46   (#2229)
  - temporalio                             >=1.7   → >=1.26   (#2227)
  - websockets                             >=12    → >=16     (#2224)
  - opentelemetry-sdk                      >=1.24  → >=1.41.1 (#2219)

GitHub Actions (SHA-pinned per existing convention):
  - dorny/paths-filter@d1c1ffe (v3) → @fbd0ab8 (v4.0.1)        (#2215)

REMOVED from this batch (lockfile platform mismatch):
  - #2231 @types/node ^22 → ^25.6   (npm install on macOS strips
    Linux-only @emnapi/* entries from package-lock.json that CI's
    `npm ci` then refuses; needs a Linux-side install to land cleanly)
  - #2230 jsdom ^25 → ^29.1          (same)

NOT included in this batch (deferred to per-PR human review):
  - #2228 github/codeql-action     v3 → v4   (CodeQL CLI alignment risk)
  - #2218 actions/setup-node       v4 → v6   (default Node version drift)
  - #2216 actions/upload-artifact  v4 → v7   (3 major versions)
  - #2214 actions/setup-python     v5 → v6   (action major)

NOT merged (CI failing on dependabot's own PR):
  - #2233 next 15 → 16
  - #2232 tailwindcss 3 → 4
  - #2226 typescript 5 → 6

Verified:
  - workspace-server: `go mod tidy && go build ./... && go test ./...` — green
  - workspace requirements.txt: floor bumps only
2026-04-28 16:25:46 -07:00
..
adapters fix: comprehensive a2a-sdk 1.x migration sweep across workspace/ 2026-04-27 09:42:57 -07:00
builtin_tools fix(runtime): use lowercase wire role for v0.3 JSON-RPC compat layer 2026-04-27 12:40:11 -07:00
lib feat(workspace): pre-stop serialization for pause/resume (closes #1386) 2026-04-21 12:40:44 +00:00
molecule_audit chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
plugins_registry feat(plugin): implement MCPServerAdaptor (issue #847) 2026-04-24 01:42:13 +00:00
policies chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
scripts fix(git-token-helper): close TOCTOU window + stop swallowing chmod errors (closes #1552) 2026-04-26 08:22:29 -07:00
skill_loader feat(skills): per-skill runtime compatibility (#119, hermes pattern) 2026-04-27 01:57:43 -07:00
tests test: update test_peer_capabilities_format for fallback behavior 2026-04-28 14:15:42 -07:00
.coveragerc test(workspace): centralize pytest-cov config + 92% floor (closes #1817) 2026-04-26 06:21:22 -07:00
a2a_cli.py fix(runtime): use lowercase wire role for v0.3 JSON-RPC compat layer 2026-04-27 12:40:11 -07:00
a2a_client.py fix(a2a): auto-retry transient transport errors in send_a2a_message 2026-04-27 13:52:01 -07:00
a2a_executor.py fix: comprehensive a2a-sdk 1.x migration sweep across workspace/ 2026-04-27 09:42:57 -07:00
a2a_mcp_server.py feat(tools): tighten send_message_to_user description to forbid pasting URLs in body 2026-04-27 01:13:11 -07:00
a2a_tools.py feat(tools): borrow hermes-style discipline — error/summary caps + sharper MCP descriptions 2026-04-26 23:25:54 -07:00
adapter_base.py feat(skills): per-skill runtime compatibility (#119, hermes pattern) 2026-04-27 01:57:43 -07:00
agent.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
agents_md.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
build-all.sh fix: update workspace script comments for workspace-template → workspace rename 2026-04-18 01:48:05 -07:00
config.py fix(compliance): flip default mode to owasp_agentic (detect-only) 2026-04-24 11:52:09 -07:00
consolidation.py fix: apply #1124 env-var defaults + scrub F1088 credentials from INCIDENT_LOG.md (#1347) 2026-04-21 08:11:44 +00:00
coordinator.py fix: apply #1124 env-var defaults + scrub F1088 credentials from INCIDENT_LOG.md (#1347) 2026-04-21 08:11:44 +00:00
Dockerfile feat(workspace): 45-min gh-token refresh daemon + credential helper cache 2026-04-22 19:52:46 -07:00
entrypoint.sh fix(workspace): credential helper security hardening (#1797) 2026-04-23 18:14:55 +00:00
events.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
executor_helpers.py fix(runtime): replace remaining /app/ legacy paths in agent prompts + docstrings 2026-04-27 11:22:00 -07:00
heartbeat.py fix(runtime): use lowercase wire role for v0.3 JSON-RPC compat layer 2026-04-27 12:40:11 -07:00
initial_prompt.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
main.py fix(workspace): use SDK constant for agent-card readiness probe 2026-04-27 16:43:32 -07:00
molecule_ai_status.py fix(runtime): replace remaining /app/ legacy paths in agent prompts + docstrings 2026-04-27 11:22:00 -07:00
platform_auth.py fix(workspace): tag self-originated A2A POSTs with X-Workspace-ID 2026-04-24 19:54:43 -07:00
plugins.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
preflight.py feat(preflight): replace SUPPORTED_RUNTIMES static list with adapter discovery 2026-04-27 00:44:51 -07:00
prompt.py fix(review): address code review blockers on tool-trace + instructions 2026-04-22 16:18:06 -07:00
pytest.ini feat(preflight): replace SUPPORTED_RUNTIMES static list with adapter discovery 2026-04-27 00:44:51 -07:00
rebuild-runtime-images.sh fix: update workspace script comments for workspace-template → workspace rename 2026-04-18 01:48:05 -07:00
requirements.txt chore(deps): batch dep bumps — 11 safe upgrades from 2026-04-28 dependabot wave 2026-04-28 16:25:46 -07:00
runtime_wedge.py chore(workspace): drop claude_sdk_executor — Phase 2 of #87 2026-04-27 00:52:55 -07:00
shared_runtime.py fix(workspace): keep peers visible in coordinator prompt when agent_card is null 2026-04-28 14:10:29 -07:00
transcript_auth.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00
watcher.py chore: open-source restructure — rename dirs, remove internal files, scrub secrets 2026-04-18 00:24:44 -07:00