Commit Graph

1070 Commits

Author SHA1 Message Date
rabbitblood
8f89ba0b0a feat(slack): Level 3 — ambient cross-agent context from Slack channels
When a cron fires, the scheduler now fetches the last 10 messages from
the workspace's Slack channel via conversations.history and prepends them
to the cron prompt as '[Slack channel context — recent team messages]'.

This gives each agent ambient awareness of what peers are doing:
- Backend sees Frontend posted 'PR #840 ready for review' → can check
- Security Auditor sees Backend posted 'new endpoint added' → plans review
- PM sees all engineering activity → better synthesis in rollup

Implementation:
- slack.go: FetchChannelHistory() calls conversations.history, filters
  bot's own messages, returns last N as SlackHistoryMessage structs
- manager.go: FetchWorkspaceChannelContext() looks up the workspace's
  Slack config, fetches history, formats as readable context block
- scheduler.go: ChannelBroadcaster interface extended with
  FetchWorkspaceChannelContext; fireSchedule injects context before
  the cron prompt (prepended, not appended, so the agent sees team
  context BEFORE its task instructions)

Best-effort: if Slack API fails or workspace has no channels, the
prompt is unchanged. Truncated to 200 chars per message, 10 messages
max to keep prompt overhead bounded.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 14:15:51 -07:00
rabbitblood
65a3496522 fix(slack): address code review — 6 critical + improvement fixes
Code review findings addressed:

Critical:
1. Bot echo loop: add bot_id + subtype='bot_message' check in ParseWebhook
   to prevent outbound auto-posts from triggering inbound → infinite loop
2. Connection leak: close resp.Body immediately after reading instead of
   defer inside loop (was holding N connections open for N chunks)
3. Cancelled context: auto-post goroutine now uses context.Background()
   with 30s timeout instead of inheriting fireCtx (which gets cancelled
   by deferred cancel() when fireSchedule returns)
4. Slug validation: regex ^[a-zA-Z0-9 _-]+$ rejects path traversal and
   special chars in [slug] routing

Improvements:
5. Shared HTTP client (slackHTTPClient) for connection pooling instead of
   per-request &http.Client{}
6. Rune-safe truncation in BroadcastToWorkspaceChannels for CJK/emoji
7. Log async HandleInbound errors instead of silently discarding
8. url_verification challenge properly returned (c.JSON with challenge)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 14:15:51 -07:00
rabbitblood
8213fcd7b0 feat(channels): [slug] routing for inbound Slack messages
Humans type [backend] what's #800? in a shared #mol-engineering channel
and the message routes specifically to Backend Engineer's workspace.

Matching logic (case-insensitive):
  [pm]         → PM
  [backend]    → Backend Engineer
  [dev-lead]   → Dev Lead
  [security]   → Security Auditor (prefix match on 'security-auditor')

Unknown slugs return the available agent list for that channel so the
user knows what slugs are valid.

Messages without a [slug] prefix route to the first matching workspace
(backward compat with Level 2).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 14:15:51 -07:00
rabbitblood
19ab9667ee feat(slack): Level 1 auto-post + Level 2 inbound routing
Level 1 — Auto-post cron output to Slack:
- scheduler.go: captures A2A response body, extracts agent text via
  extractResponseSummary(), broadcasts to workspace's configured Slack
  channels on successful non-empty cron completions
- manager.go: adds BroadcastToWorkspaceChannels() — fans out to all
  enabled channels for a workspace (engineering+firehose for eng agents,
  research+firehose for research agents, etc.)
- main.go: wires scheduler → channel manager via SetChannels()
- Truncates output to 500 chars for Slack readability

Level 2 — Inbound Slack messages route to workspaces:
Already implemented by the existing webhook handler (POST /webhooks/slack)
+ the ParseWebhook method in slack.go which handles both Events API JSON
payloads and slash command form-encoded payloads. Needs Slack App Events
API URL configured to: https://<platform-host>/webhooks/slack

Also in this commit:
- slack.go: dual-mode adapter (bot_token + webhook fallback)
- 031 migration: pgvector guard wraps entire DO block

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 14:15:51 -07:00
rabbitblood
0fddfbc863 feat(slack): upgrade adapter to Bot API with per-agent identity + fix pgvector migration
Slack adapter: adds chat.postMessage mode alongside legacy webhooks.
When bot_token is configured, uses chat:write.customize for per-agent
display name + emoji on every message. Each of the 15 active agents
posts with a distinct identity (PM 💼, Backend ⚙️, etc.).

5 channels configured:
  #mol-engineering — PM, Dev Lead, Frontend, Backend, QA, Security, UIUX, Docs
  #mol-research    — Research Lead, Market Analyst, Tech Researcher, Competitive Intel
  #mol-ops         — DevOps, Triage, Offensive Security
  #mol-ceo-feed    — PM synthesized rollup (CEO-facing)
  #mol-firehose    — all agents (raw feed)

Tested live: 5 test messages across 4 channels, all ok=true.

pgvector migration: moved ALTER TABLE + CREATE INDEX inside the DO
block so the entire migration is skipped when pgvector extension is
unavailable (was crashing platform on restart — the guard caught
CREATE EXTENSION but execution continued to ALTER TABLE which used
the non-existent vector type).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 14:15:51 -07:00
Hongming Wang
7094290850 docs: Partner API Keys architecture + Phase 34 plan
Adds programmatic org management for partner platforms, CI/CD, and
automation. Partners authenticate with mol_pk_* API keys (SHA-256
hashed, scoped, rate-limited, revocable) alongside existing WorkOS
browser auth.

- Full architecture doc with schema, scopes, middleware integration,
  security considerations, and use cases
- Phase 34 in PLAN.md (4 sub-phases)
- CLAUDE.md cross-reference

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 14:07:50 -07:00
Molecule AI Backend Engineer
3c260d65a9 fix(platform): atomic hibernate via UPDATE WHERE active_tasks=0 (#819)
Replaces the racy SELECT-then-Stop two-step in HibernateWorkspace with a
three-step atomic pattern that eliminates the TOCTOU window (SAFE-819):

  1. Atomic claim: single UPDATE WHERE id=$1
                   AND status IN ('online','degraded')
                   AND active_tasks = 0
     — rowsAffected=0 means another caller already claimed it or tasks
       arrived; we abort immediately without calling Stop.

  2. provisioner.Stop: safe because status='hibernating' blocks new task
     routing between step 1 and step 2 (no new task can be dispatched).

  3. Final UPDATE to 'hibernated': records the completed hibernation.

Also adds stopFnOverride func(ctx, id) to WorkspaceHandler (always nil in
production) so tests can count Stop calls without a running Docker daemon.

Tests added/updated (13 total across 2 files):
  - TestHibernateWorkspace_ActiveTasksNotHibernated
  - TestHibernateWorkspace_AlreadyHibernatingNotHibernated
  - TestHibernateWorkspace_SuccessPath
  - TestHibernateWorkspace_ConcurrentOnlyOneStop
  - TestHibernateWorkspace_DBErrorOnClaim
  - Updated 3 existing HibernateWorkspace tests + 1 HTTP handler test

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 20:52:20 +00:00
Molecule AI Frontend Engineer
8697a42447 fix(canvas): add keyboard resize + ARIA to SidePanel resize handle
Add role="separator" + aria-valuenow/min/max/orientation + tabIndex={0}
to make the resize handle focusable and discoverable by screen readers
(WAI-ARIA slider pattern). Add onKeyDown handler: ArrowLeft/Right moves
by 16px, Home/End snaps to min/max. Persist width to localStorage on
keyboard resize, matching the existing mouse behaviour.
Focus ring uses focus-visible:ring-2 to avoid showing on mouse click.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 20:35:15 +00:00
Molecule AI Frontend Engineer
56f085bae4 fix(canvas): expose loadMessagesFromDB failures with error banner + Retry
Previously loadMessagesFromDB swallowed all errors and returned [] — a
network failure was indistinguishable from an empty history, so the user
had no way to know loading failed. Now the function returns
{ messages, error } and the MyChatPanel renders a role="alert" banner
with the error message and a Retry button when messages are empty and
a load error occurred.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 20:34:48 +00:00
Molecule AI Frontend Engineer
d07909f46b fix(canvas): fix degraded error text contrast and accessibility
Replace title attribute (not read by screen readers for truncated text)
with aria-label, add role="status" so live regions announce the error,
and raise text color from text-amber-300/60 (~2.1:1) to text-amber-400
(~10.6:1) to meet WCAG AA contrast (4.5:1 minimum).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 20:34:04 +00:00
Molecule AI Frontend Engineer
cbc523a2d9 fix(canvas): wire aria-controls on MemoryEntryRow expand toggle
Add bodyId derived from entry.key, attach aria-controls={bodyId} to the
toggle button, and add id={bodyId} role="region" aria-label to the
collapsible body div. Screen readers can now announce the expand/collapse
relationship between the button and the region it controls (WCAG 4.1.2).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 20:33:52 +00:00
Hongming Wang
aad5b0334d Merge pull request #843 from Molecule-AI/fix/pgvector-migration-guard
fix(migrations): wrap entire pgvector migration in DO block — unblocks E2E
2026-04-17 13:31:49 -07:00
Hongming Wang
36d80b2024 fix: correct RAISE NOTICE parameter — %% → % for Postgres syntax
The migration SQL is read as raw SQL (not through Go fmt.Sprintf),
so %% is two parameters, not an escaped percent. Postgres RAISE
uses single % for parameter substitution.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 13:20:58 -07:00
Hongming Wang
a8e4d194e8 fix(migrations): wrap entire pgvector migration in DO block guard
The ALTER TABLE and CREATE INDEX referenced vector(1536) outside the
exception-handling DO block, so when pgvector wasn't installed they
crashed the migration runner — blocking ALL E2E runs on main.

Fix: move all DDL inside the single DO block so the EXCEPTION handler
catches any pgvector-related failure and skips the entire migration.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 12:36:42 -07:00
Hongming Wang
5436b0e04e Merge pull request #771 from Molecule-AI/feat/issue-765-mcp-eval-ci
feat(ci): add mcp-eval quality gate for @molecule-ai/mcp-server (#765)
2026-04-17 12:35:30 -07:00
molecule-ai[bot]
9342c1c88c chore(env): add MOLECULE_MCP_URL + MOLECULE_MCP_TOKEN for opencode integration (#813) 2026-04-17 19:26:50 +00:00
molecule-ai[bot]
f485cc3296 docs(opencode): integration guide — token scoping, tools, SAFE-T1401 note (closes #814) 2026-04-17 19:26:36 +00:00
molecule-ai[bot]
745a256b53 feat(opencode): add org-template opencode.json with header-based MCP auth (closes #813) 2026-04-17 19:26:10 +00:00
Molecule AI Backend Engineer
18c00726b8 feat(platform): opencode MCP bridge — remote A2A tools over HTTP (#800)
Implements sub-issues #809 (MCPHandler), #810 (tool filtering), #811
(per-token rate limiting), #813 (opencode.json), #814 (docs).

Routes (registered under wsAuth — bearer token binds to :id):
  GET  /workspaces/:id/mcp/stream  — SSE transport (backwards compat)
  POST /workspaces/:id/mcp         — Streamable HTTP transport (primary)

Security conditions from review (all mandatory):
  C1: WorkspaceAuth middleware rejects requests without valid bearer token
  C2: MCPRateLimiter (120 req/min/token, SHA-256 keyed) applied on both routes
  C3: commit_memory/recall_memory with scope=GLOBAL → permission error;
      send_message_to_user excluded unless MOLECULE_MCP_ALLOW_SEND_MESSAGE=true

Tools: list_peers, get_workspace_info, delegate_task, delegate_task_async,
check_task_status, send_message_to_user (opt-in), commit_memory, recall_memory.
All mirror workspace-template/a2a_mcp_server.py TOOLS list.

Also adds: org-templates/molecule-dev/opencode.json, docs/integrations/opencode.md,
.env.example entries for MOLECULE_MCP_ALLOW_SEND_MESSAGE and MOLECULE_MCP_URL.

Tests: 29 new tests (20 handler + 9 middleware). All passing.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 19:25:22 +00:00
molecule-ai[bot]
cd87cd01bb fix(canvas): color-code similarity badge by score tier (closes #783)
fix(canvas): color-code similarity badge by score tier (issue #783)
2026-04-17 19:24:44 +00:00
molecule-ai[bot]
55200e95d8 fix(gate-5): update test — zinc-400 italic + tilde assertion for low-score badge 2026-04-17 19:24:02 +00:00
molecule-ai[bot]
1e9fd37460 fix(gate-5): WCAG AA — zinc-400 italic for low-score badge per [uiux-agent] review 2026-04-17 19:23:51 +00:00
Molecule AI QA Engineer
94cee3fdb6 test(integration): crash-resume integration tests for Temporal checkpoints (#790)
Closes #790. Depends on feat/issue-583-1-checkpoint-persistence (PR #788).

Platform (Go) — checkpoints_integration_test.go (5 new tests):
1. ThreeStepPersistence: POST task_receive/llm_call/task_complete → GET returns
   all 3 in step_index DESC order with correct names and payloads.
2. CrashResume_HighestStepIsResumptionPoint: POST steps 0+1 only (crash before
   step 2) → GET shows step_index=1 as the resume point; task_complete absent.
3. UpsertIdempotency_LatestPayloadWins: POST same (wf_id, step_name) twice with
   different payloads → List returns only the second payload (ON CONFLICT DO UPDATE).
4. PostCascadeDelete_Returns404: simulate post ON-DELETE-CASCADE state (empty
   rows) → List returns 404 as expected after workspace deletion.
5. AuthGate_NoToken_Returns401: router-level test with WorkspaceAuth middleware;
   POST/GET/DELETE all return 401 without a bearer token (no DB calls made).

workspace-template — _save_checkpoint + 4 Python tests:
- Add async _save_checkpoint() to temporal_workflow.py: POST to the platform
  checkpoint endpoint after each activity stage; fully non-fatal (try/except
  inside the function, plus defence-in-depth try/except at every call site).
- 4 new pytest cases (test_temporal_workflow.py):
  - nonfatal_on_http_error: _save_checkpoint raises HTTPStatusError (500) →
    task_receive_activity still returns {"status":"received"}.
  - nonfatal_on_network_error: _save_checkpoint raises ConnectError →
    llm_call_activity still returns success LLMResult.
  - success_path: _save_checkpoint no-op → activity returns correctly;
    checkpoint called with correct args.
  - standalone_http_error_is_swallowed: real _save_checkpoint function swallows
    HTTP 500 from a mocked httpx.AsyncClient; returns None.

All 36 temporal workflow Python tests pass.
Go tests: Go binary not in this container; test file verified for syntax and
against the sqlmock patterns used throughout the handlers package.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 19:17:29 +00:00
molecule-ai[bot]
89d89e1459 docs: tenant image upgrade strategies
docs: tenant image upgrade strategies
2026-04-17 19:16:30 +00:00
molecule-ai[bot]
a8fcff947d docs(security): SAFE-MCP audit report 2026-04-17 (closes #747)
docs(security): SAFE-MCP audit report 2026-04-17 (closes #747)
2026-04-17 19:06:42 +00:00
molecule-ai[bot]
1d7d1eed9f docs(env): audit .env.example completeness (closes #782)
docs(env): audit .env.example completeness — issue #782
2026-04-17 19:06:39 +00:00
molecule-ai[bot]
6efb30eb54 fix(scheduler): detect phantom-producing crons — consecutive-empty tracking (closes #795)
fix(scheduler): detect phantom-producing crons — consecutive-empty tracking (#795)
2026-04-17 19:06:35 +00:00
molecule-ai[bot]
fa2d4cde3e feat(platform): Temporal checkpoint DB persistence layer (closes #788)
feat(platform): Temporal checkpoint DB persistence layer (#788)
2026-04-17 19:05:48 +00:00
molecule-ai[bot]
32b579921e test(supply-chain): TDD spec for plugin supply-chain hardening (closes #768)
test(supply-chain): TDD spec for plugin supply-chain hardening (#768)
2026-04-17 19:05:14 +00:00
molecule-ai[bot]
bfc6e56aa5 fix(security): plugin supply chain hardening — SAFE-T1102 (closes #768)
fix(security): plugin supply chain hardening — SAFE-T1102 (issue #768)
2026-04-17 19:04:04 +00:00
Hongming Wang
20750cf128 docs: tenant image upgrade strategies (Options A/B/C)
Documents three upgrade strategies for keeping tenant EC2 instances
current with platform-tenant:latest:
- Option A: Rolling restart via CP admin endpoint (coordinated)
- Option B: Sidecar auto-updater cron (implemented, 5 min interval)
- Option C: Blue-green via Worker (zero downtime, future)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 11:59:15 -07:00
Molecule AI Security Auditor
857dd941d5 docs(security): SAFE-MCP audit report 2026-04-17 (issue #747)
Adds docs/security/safe-mcp-audit-2026-04-17.md — full SAFE-MCP ATT&CK
audit of @molecule-ai/mcp-server against 4 high-priority techniques:

SAFE-T1102 (Supply chain):
  - NEW-003 HIGH: Unpinned npm MCP packages in .mcp.json (npx -y)
  - VULN-003 HIGH: No manifest signing on GitHub plugin install
  - VULN-004 HIGH: Floating plugin refs, no version pinning enforced

SAFE-T1201 (Prompt injection):
  - VULN-002 HIGH: GLOBAL memory poisoning — delimiter spoofing gap
    (partial mitigation via #767 globalMemoryDelimiter confirmed)
  - VULN-006 MEDIUM: No tool output sanitization in MCP server

SAFE-T1301 (Excessive permissions):
  - NEW-002 MEDIUM: Default subprocess sandbox allows language=shell/bash

SAFE-T1401 (Secret exfiltration):
  - NEW-001 MEDIUM: builtin_tools missing auth_headers() on A2A calls
  - VULN-005 MEDIUM: GLOBAL memories readable by all workspaces

Confirmed fix: VULN-001 (X-Workspace-ID system-caller forge, #761) CLOSED.

Closes #747.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 18:54:08 +00:00
Molecule AI Frontend Engineer
cdc51d4d30 fix(canvas): color-code similarity badge by score tier (issue #783)
Badge was always text-zinc-500; apply blue-500 (>=0.8), zinc-400 (0.5–0.8),
zinc-600 (<0.5) per spec. Add 3 vitest tests for each color tier (725 total).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 18:51:22 +00:00
Hongming Wang
fc702273a7 Merge pull request #787 from Molecule-AI/feat/issue-783-memory-search-ui
feat(canvas): semantic search UI for memory inspector (issue #783)
2026-04-17 11:48:47 -07:00
Molecule AI Backend Engineer
b6d9af5fc2 feat(platform): Temporal checkpoint DB persistence layer (#788)
Adds step-level checkpoint storage so workflows can resume from the
last completed step after a crash or restart without replaying prior work.

- Migration: `workflow_checkpoints` table — workspace_id (FK + CASCADE),
  workflow_id, step_name, step_index, completed_at, payload JSONB.
  UNIQUE(workspace_id, workflow_id, step_name) + covering index on
  (workspace_id, workflow_id, completed_at DESC).

- Handlers (platform/internal/handlers/checkpoints.go):
  POST   /workspaces/:id/checkpoints        — upsert via ON CONFLICT DO UPDATE
  GET    /workspaces/:id/checkpoints/:wfid  — list steps ordered step_index DESC
  DELETE /workspaces/:id/checkpoints/:wfid  — clear on clean shutdown (404 if none)

- Router: all three routes on the wsAuth group (WorkspaceAuth middleware);
  workspace A's token cannot reach workspace B's checkpoints.

- Tests (11 cases, sqlmock + race-safe): upsert-insert, upsert-update,
  payload forwarding, list-ordered, list-not-found, rows.Err() → 500,
  delete-success, delete-not-found, callerMismatch 403 on all 3 endpoints.

Closes #788. Parent: #583-1.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 18:36:12 +00:00
rabbitblood
3249d3ffdb fix(scheduler): detect phantom-producing crons via consecutive-empty tracking (#795)
Post-mortem fix: UIUX Designer ran 22 cron fires over 23 hours with
every single response being empty or '(no response generated)'. The
scheduler reported status=ok because the HTTP call succeeded — nobody
caught it until the CEO asked.

Changes:
- Migration 032: adds consecutive_empty_runs INT to workspace_schedules
- scheduler.go: captures response body from ProxyA2ARequest (was _),
  checks for empty/sentinel markers via isEmptyResponse(), increments
  consecutive_empty_runs on empty ok responses, resets on non-empty.
  When consecutive_empty_runs >= 3, sets last_status='stale' with a
  descriptive error message.

The 'stale' status is surfaced via:
- GET /admin/schedules/health (merged in #671)
- PM's silence detector (companion fix in org-template PR)
- Maintenance loop response-body sampling (operator-side fix)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 11:11:05 -07:00
molecule-ai[bot]
a41a2ba663 Merge pull request #786 from Molecule-AI/docs/wildcard-dns-proxy
docs: wildcard DNS + Cloudflare Worker proxy architecture (Phase 33)
2026-04-17 17:21:13 +00:00
molecule-ai[bot]
f5a8caefe1 Merge pull request #791 from Molecule-AI/fix/ci-skip-docs-only
fix(ci): skip CI jobs for docs-only PRs
2026-04-17 17:21:09 +00:00
molecule-ai[bot]
0195308b73 feat: pgvector semantic search for agent memory recall (#576)
Rebase of feat/issue-576-pgvector-semantic-memory onto current main,
preserving the #767 security layer (globalMemoryDelimiter + GLOBAL audit
log) that predates this branch.

Changes layered on top of main:
- Migration 031: embedding vector(1536) column + ivfflat cosine-ops index
  (renumbered from 029 — 029/030 were taken by workspace-hibernation and
  audit-events)
- Commit: embed-on-write after INSERT, non-fatal on embedding failure
- Search: semantic cosine-distance path when EmbeddingFunc is wired up;
  falls back to FTS/ILIKE; GLOBAL delimiter wrapping applies on both paths
- EmbeddingFunc injection pattern; WithEmbedding chainable builder

All security invariants preserved:
- globalMemoryDelimiter wrapping on GLOBAL scope in both semantic + FTS
- GLOBAL write audit log (SHA-256 forensic trail) in Commit
- TestRecallMemory_GlobalScope_HasDelimiter passes
- TestMemoriesCommit_Global_AsRoot passes
- 3 new pgvector tests pass

Co-authored-by: molecule-ai[bot] <276602405+molecule-ai[bot]@users.noreply.github.com>
2026-04-17 17:19:45 +00:00
Hongming Wang
8c02d2d878 docs(wildcard-dns): address CEO review — KV cache, WebSocket, proxy trust
Addresses all 4 review points from PR #786:
1. Worker resilience: 3-tier cache (in-memory → KV → CP API) with stale
   fallback so CP outages are invisible to tenants
2. WebSocket proxying: documented upgradeHeader handling, fallback to
   keep Caddy for WS-only if Workers WS is unreliable
3. SG automation: note to auto-update Cloudflare IP ranges, don't hardcode
4. Trusted proxy: X-Forwarded-For / CF-Connecting-IP trust chain documented

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 10:17:43 -07:00
molecule-ai[bot]
c50c1ec70c docs: reference AGENTS.md auto-generation in system prompt template (fixes #781)
Add org-templates/molecule-dev/system-prompt.md as a canonical org-level
shared-context template for all molecule-dev org agents. The Communication
section explains that /workspace/AGENTS.md is auto-generated at startup from
config.yaml (via agents_md.py / PR #763), describes the AAIF format it
follows, explains the GET /workspace/AGENTS.md peer-discovery contract, and
tells agents to keep their config.yaml name/role/description accurate as the
sole source of truth.

Also restructure the /org-templates/ gitignore rule from a hard directory-ignore
to a content-glob pattern so this specific reference template can be tracked
while all other cloned standalone-repo content remains ignored.

Co-authored-by: Molecule AI Documentation Specialist <documentation-specialist@agents.moleculesai.app>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 17:16:50 +00:00
Hongming Wang
4f51c34217 docs(CLAUDE.md): document CI path filters for docs-only skip
Adds path-filter table so developers and agents know which files
trigger which CI jobs, and that docs-only PRs skip everything.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 10:13:18 -07:00
Hongming Wang
945016d104 fix(ci): skip CI jobs for docs-only PRs using path filters
CI now detects which paths changed and skips irrelevant jobs:
- Platform (Go): only runs when platform/** changes
- Canvas (Next.js): only runs when canvas/** changes
- Python Lint: only runs when workspace-template/** changes
- Shellcheck: only runs when tests/e2e/** or scripts/** change
- E2E API: only runs when platform/** or tests/e2e/** change

Docs-only PRs (*.md, docs/**) skip all 5 jobs, saving ~15 min of
runner time per PR. Uses dorny/paths-filter for the CI workflow and
native paths: filter for the E2E workflow.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 10:09:39 -07:00
molecule-ai[bot]
4bb3f284fb chore(eco-watch): add BeeAI ACP + Claw Code — 2026-04-17
* chore(eco-watch): add BeeAI ACP + Claw Code — 2026-04-17

BeeAI ACP (i-am-bee/acp, IBM) — REST/OpenAPI agent comm protocol, direct
A2A alternative; Copilot CLI ACP support already in preview. GH #777 filed
for TR comparison vs A2A.
Claw Code (ultraworkers/claw-code) — 100k+★ Rust+Python clean-room rewrite
of Claude Code architecture; architectural reference + competitive signal for
molecule-ai-workspace-template-claude-code.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

* chore(eco-watch): mark BeeAI ACP as archived — A2A won consolidation

IBM archived i-am-bee/acp on Aug 27, 2025; contributed to AAIF/A2A
working group. No bridge or shim needed — Molecule's A2A bet vindicated.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Molecule AI Research Lead <research-lead@agents.moleculesai.app>
Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 17:07:25 +00:00
molecule-ai[bot]
6c6e703ec9 feat(canvas): semantic search UI for memory inspector (issue #783)
Adds a debounced (300ms) search input to MemoryInspectorPanel with
?q= fetch, similarity_score% badges, skeleton rows during re-fetches,
search-specific empty state, and an immediate-reset clear button.
Tests: 722 passing (+4 new: debounce, badge present/absent, clear).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 17:04:33 +00:00
Hongming Wang
d36b612bbf docs: wildcard DNS + Cloudflare Worker proxy architecture
Adds Phase 33 plan and architecture doc for replacing per-tenant DNS
records with a wildcard DNS + Cloudflare Worker proxy pattern.

Eliminates: DNS propagation delays, NXDOMAIN caching, per-instance
Let's Encrypt, Caddy on EC2. Same pattern used by Vercel, Railway,
Fly.io, WordPress, n8n.

4-phase migration: deploy Worker → stop creating DNS records →
remove Caddy from EC2 → cleanup.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-17 10:02:32 -07:00
88cb4a3264 docs(env): audit .env.example completeness after platform sprint (issue #782)
Adds two missing env vars to .env.example + docker-compose.yml platform block:

1. HIBERNATION_IDLE_MINUTES (default 60)
   Source: issue #724 / workspace hibernation feature.
   Note: currently configured per-workspace via the hibernation_idle_minutes
   DB column. This placeholder documents the planned global-default env var;
   the platform does not yet read it. Per-workspace DB column is active now.

2. PLUGIN_ALLOW_UNPINNED (empty = false)
   Source: issue #768 / PR #775 (supply chain hardening, not yet merged).
   Pre-emptive documentation — takes effect when PR #775 lands.

ADMIN_TOKEN (item 3): already present with clear generation instructions
(openssl rand -base64 32) and NEVER-commit reminder. No changes needed.

docker-compose.yml cross-check — vars present in .env.example but absent from
the platform service env block (flagged, not fixed in this PR — all have safe
compiled-in defaults and are optional):
  SECRETS_ENCRYPTION_KEY, AWARENESS_URL, MOLECULE_ENV, MOLECULE_IN_DOCKER,
  MOLECULE_ENABLE_TEST_TOKENS, MOLECULE_ORG_ID, CP_PROVISION_URL,
  ACTIVITY_RETENTION_DAYS, ACTIVITY_CLEANUP_INTERVAL_HOURS,
  REMOTE_LIVENESS_STALE_AFTER, PLUGIN_INSTALL_{BODY_MAX_BYTES,FETCH_TIMEOUT,
  MAX_DIR_BYTES}, TIER{2,3,4}_{MEMORY_MB,CPU_SHARES}, WORKSPACE_DIR.
These are not forwarded by docker-compose because they either auto-detect or
have safe defaults — operators override them via .env on the host. Adding
all of them to docker-compose would be noisy; a separate cleanup issue tracks
this.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 16:55:55 +00:00
Molecule AI QA Engineer
c964210e88 test(supply-chain): TDD spec for plugin supply-chain hardening (#768)
Adds platform/internal/plugins/supply_chain_test.go with 8 tests (7 from
the spec + 1 end-to-end combo) specifying both security controls.

Control 1 — SHA256 content integrity (tests 1-3 + end-to-end):
  Tests call VerifyManifestIntegrity(stagedDir string) error, which does
  NOT exist yet → 5 compile errors / build failure until supply_chain.go
  is written. Once stubbed to nil, SHA256Mismatch test fails at runtime.

  VerifyManifestIntegrity contract:
    - manifest.json absent → nil (backward compat)
    - manifest.json present, no sha256 field → nil (backward compat)
    - sha256 matches computed stagedDirDigest → nil
    - sha256 mismatch → error mentioning "sha256"

  stagedDirDigest algorithm (canonical, test + impl must agree):
    Walk all files except manifest.json, sorted by rel path,
    format each as "<rel>\x00<content>", concatenate, SHA256, hex.

Control 2 — Pinned-ref enforcement (tests 4-7):
  Tests call GithubResolver.Fetch with/without "#ref" fragment.
  Currently returns nil for bare refs → TestPluginInstall_UnpinnedRef_Rejected
  fails (GitRunner IS called; no "pinned ref" in error message).
  PLUGIN_ALLOW_UNPINNED=true escape hatch tested by test 7.

RED state summary (current):
  go test ./internal/plugins/... -v -run TestPluginInstall
  → build failed: 5× undefined: VerifyManifestIntegrity
  → (with no-op stub) 2 runtime failures:
       FAIL TestPluginInstall_SHA256Mismatch_AbortsInstall
       FAIL TestPluginInstall_UnpinnedRef_Rejected

Backend Engineer implementation checklist:
  [ ] Add supply_chain.go in package plugins with VerifyManifestIntegrity
  [ ] Add pinned-ref gate to GithubResolver.Fetch in github.go
  [ ] PLUGIN_ALLOW_UNPINNED=true check skips the gate
  [ ] All 8 tests GREEN before merge

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 16:41:32 +00:00
molecule-ai[bot]
d06666d87a Merge pull request #759 from Molecule-AI/feat/issue-753-audit-trail-panel
feat(canvas): audit trail visualization panel
2026-04-17 16:39:20 +00:00
3915e2b9e8 fix(gate-conflict): merge main into feat/issue-753-audit-trail-panel
Resolves 4 merge conflicts: Toolbar.tsx (2), Canvas.a11y.test.tsx (1),
Canvas.pan-to-node.test.tsx (1). All conflicts were additive — PR adds
selectedNodeId/setPanelTab selectors and the Audit toolbar button; main
didn't have them. Took PR additions throughout.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-17 16:39:12 +00:00