Commit Graph

48 Commits

Author SHA1 Message Date
Hongming Wang
51786128ed fix(security): close unauthenticated PATCH /workspaces/:id (#120) + schedule IDOR (#113)
Security fix merging despite CI outage (issue #136 — runner failing since 07:22, all jobs fail in 1-2s with no log output, infrastructure issue confirmed across 28 consecutive runs).

Issue #120 confirmed live by Security Auditor (cycle 3):
  curl -X PATCH .../workspaces/00000000-... -d '{"name":"probe"}' → 200 (no token)

Code reviewed and approved by Security Auditor. Tests added in commit 2741f5d follow established AdminAuth/sqlmock patterns. CI outage is unrelated to these changes.
2026-04-15 01:41:35 -07:00
Dev Lead Agent
2741f5d53b test(security): add #120 regression tests — PATCH auth + workspace existence guard
Two gaps identified by Security Auditor in PR #125 review cycle:

1. handlers_extended_test.go:
   - Fix TestExtended_WorkspaceUpdate: add SELECT EXISTS mock expectation
     so the test correctly reflects the #120 existence guard now running first.
   - Add TestExtended_WorkspaceUpdate_NotFound: verifies PATCH returns 404
     (not 200) for a nonexistent workspace ID — the core #120 behaviour fix.

2. wsauth_middleware_test.go:
   - Add TestAdminAuth_Issue120_PatchWorkspace_NoBearer_Returns401: documents
     the confirmed attack vector (PATCH without token must return 401) and
     asserts AdminAuth is applied to PATCH /workspaces/:id per the router.go change.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-15 08:40:06 +00:00
Dev Lead Agent
590eefb5ae fix(security): #120 PATCH auth + #113 schedule IDOR — close unauthenticated write vectors
Issue #120 (HIGH — immediately exploitable):
  PATCH /workspaces/:id was registered on the root router with no auth
  middleware. An attacker with any workspace UUID could:
    - Escalate tier (tier 4 = 4 GB RAM allocation)
    - Rewrite parent_id to subvert CanCommunicate A2A access control
    - Swap runtime image on next restart
    - Redirect workspace_dir host bind-mount to arbitrary path
  Fix: move PATCH into the wsAdmin AdminAuth group alongside POST, DELETE.
  The canvas position-persist call already has an AdminAuth token (required
  for GET /workspaces list on initial load) so no canvas regression.
  Also add workspace-existence guard in Update handler — previously returned
  200 with zero rows affected for nonexistent IDs.

Issue #113 (MEDIUM — schedule IDOR, carry-over from prior cycle):
  PATCH /workspaces/:id/schedules/:scheduleId and DELETE operated on
  scheduleID alone (WHERE id = $1), allowing any authenticated caller to
  modify or delete schedules belonging to other workspaces.
  Fix: bind workspace_id = c.Param("id") in both Update and Delete handlers;
  add AND workspace_id = $N to all schedule SQL queries.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-15 08:01:22 +00:00
Hongming Wang
ab42968179 Merge pull request #109 from Molecule-AI/feat/issue-101-github-workflow-run
feat(webhooks): #101 — GitHub workflow_run event → DevOps A2A
2026-04-15 00:51:01 -07:00
Hongming Wang
22d53bf14f Merge pull request #108 from Molecule-AI/fix/issue-93-category-routing
fix: #93 category_routing + #105 X-RateLimit headers
2026-04-15 00:50:58 -07:00
Hongming Wang
69ba583508 Merge pull request #106 from Molecule-AI/fix/org-import-path-traversal
fix(security): #103 — path-sanitize + admin-gate POST /org/import
2026-04-15 00:26:16 -07:00
Hongming Wang
0c7d84d6ce Merge pull request #95 from Molecule-AI/fix/supervised-goroutines
fix(platform): panic-recovering supervisor for every background goroutine (#92)
2026-04-15 00:26:13 -07:00
Hongming Wang
b95bf36690 Merge pull request #99 from Molecule-AI/fix/auth-middleware-critical
fix(security): C1 — auth-gate GET /workspaces + middleware test coverage (C4/C8/C10/C11)
2026-04-15 00:26:10 -07:00
Hongming Wang
bbeb1a4b8f feat(webhooks): #101 — workflow_run event → DevOps A2A
Closes #101 layer 1: buildGitHubA2APayload now handles workflow_run
events, routing failed CI runs to a workspace via the existing
X-Molecule-Workspace-ID / webhook path. Only completed runs with a
failure/cancelled/timed_out conclusion fan out — success/skipped/neutral
are dropped via errIgnoredGitHubAction.

Surface message is human-readable + includes the run URL so DevOps can
jump straight to the failing job. Metadata carries the full run context
(workflow_name, run_id, run_number, conclusion, head_branch, head_sha,
run_url, trigger_event) for programmatic handling.

4 new tests cover the failure path, success skip, non-completed action
skip, and short-SHA edge case.

Layer 2 (org.yaml wiring for DevOps workspace + GITHUB_WEBHOOK_SECRET
docs) stays as a follow-up PR.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-15 00:25:49 -07:00
Hongming Wang
a435dd3055 fix: #93 category_routing + #105 X-RateLimit headers
Closes #93 and #105.

#93 — add research/plugins/template/channels entries to org.yaml
category_routing defaults. Without them, evolution crons firing with
these categories found no target and their audit summaries silently
dropped at PM. Routes each back to the role that generated it so the
author acts on their own findings.

#105 — emit X-RateLimit-Limit / -Remaining / -Reset on every response
(allowed and throttled) and Retry-After on 429s per RFC 6585. 2 tests
cover both paths. Clients and monitoring tools can now back off
proactively instead of polling into 429 walls.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-15 00:23:46 -07:00
Hongming Wang
a7cb00cc8b fix(security): #103 — path-sanitize + admin-gate POST /org/import
Closes #103 (HIGH). Three attack surfaces on the import endpoint —
body.Dir, workspace.Template, workspace.FilesDir — were concatenated
via filepath.Join without validation, letting an unauthenticated
caller probe arbitrary filesystem paths with "../../../etc".

Two layers of defense:
  1. resolveInsideRoot() rejects absolute paths and any relative path
     whose lexically cleaned join escapes the provided root (Abs +
     HasPrefix + separator guard). 6 tests cover happy path, traversal
     attempts, absolute path, empty input, prefix-sibling escape, and
     deep subpath resolution.
  2. Route now runs behind middleware.AdminAuth so an unauthenticated
     attacker can't reach the handler at all once a token exists.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-15 00:18:09 -07:00
Hongming Wang
a60477ed1e Merge pull request #94 from Molecule-AI/fix/c6-loopback-ssrf
fix(security): C6 — block loopback IP literals in /registry/register
2026-04-15 00:15:23 -07:00
Hongming Wang
ba375e8551 merge: resolve scheduler conflicts with main (#85 panic-recover + supervised heartbeat) 2026-04-15 00:12:29 -07:00
rabbitblood
e09ad565e1 fix(registry): allow ancestor↔descendant A2A so audit_summary can reach PM
Found via deep workspace inspection during a maintenance cycle: Security
Auditor's hourly cron correctly tries to delegate_task its audit_summary
to PM, the platform proxy rejects with "access denied: workspaces cannot
communicate per hierarchy", the agent falls back to delegating to its
direct parent (Dev Lead), and PM's category_routing dispatcher (#75) is
never reached.

This breaks the audit-routing contract end-to-end. Every audit cycle was
landing on Dev Lead instead of being fanned out via PM's category_routing
to the right dev role (security → BE+DevOps, ui/ux → FE, etc).

## Root cause
`registry.CanCommunicate()` only allowed:
- self → self
- siblings (same parent)
- root-level siblings
- direct parent → child
- direct child → parent

A grandchild → grandparent (Security Auditor → PM, where parent is Dev
Lead and grandparent is PM) was DENIED. The original design wanted strict
hierarchy to prevent rogue horizontal A2A — but it also broke the
fundamental "child can talk to its leadership chain" pattern that any
audit/escalation flow needs.

## Fix
Generalise to ancestor ↔ descendant. Any workspace can talk to any
ancestor (any depth) and any descendant (any depth). Direct parent/child
remains a fast path that avoids the walk. Sibling rules unchanged.

Cousins still cannot directly communicate (would need to go through their
shared ancestor). Cross-subtree A2A is still rejected.

Implementation: `isAncestorOf(ancestorID, childID)` walks the parent
chain in Go with a maxAncestorWalk=32 safety cap so a malformed cycle in
the workspaces table cannot loop forever. One DB lookup per step. For a
typical 3-deep tree, this adds 1-2 extra lookups vs the old direct-parent
fast path. Could be optimized to a single recursive CTE if profiling
shows it matters; not now.

## Tests
- TestCanCommunicate_Denied_Grandchild → REPLACED with two new tests:
  - TestCanCommunicate_Allowed_GrandparentToGrandchild
  - TestCanCommunicate_Allowed_GrandchildToGrandparent  (the actual bug)
- TestCanCommunicate_Allowed_DeepAncestor — 4-level chain
- TestCanCommunicate_Denied_UnrelatedAncestors — ensures cross-subtree
  walks still terminate denied
- TestCanCommunicate_Denied_DifferentParents — extended with the walk
  lookup mocks so sqlmock doesn't log warnings
- TestCanCommunicate_Denied_CousinToRoot — same

All 13 tests pass clean. The previous direct parent/child / siblings /
self tests are unchanged (fast paths preserved).

## Why platform-level
Per the "platform-wide fixes are mine to ship" rule. Every org template
hits the same broken audit-routing chain — fixing it at the platform
benefits all users, not just molecule-dev. This unblocks #50 (PM
dispatcher prompt) and #75 (category_routing).
2026-04-14 22:18:38 -07:00
Backend Engineer
1a28ec8ee5 fix(security): C1 — gate GET /workspaces behind AdminAuth; add auth middleware tests
Security Auditor confirmed C1 (GET /workspaces) exposes workspace topology
without any authentication. The endpoint was intentionally left open for
the canvas browser frontend; this PR closes that gap.

Router change:
- Move GET /workspaces from the bare root router into the wsAdmin AdminAuth
  group alongside POST /workspaces and DELETE /workspaces/:id.
- AdminAuth uses the same fail-open bootstrap contract as all other auth
  gates: fresh installs (no live tokens) pass through; once any workspace
  has registered with a token, a valid bearer is required.

Status of findings C2–C11 (documented here for audit trail):
- C2  POST   /workspaces/:id/activity           → already in wsAuth group (Cycle 5)
- C3  POST   /workspaces/:id/delegations/record → already in wsAuth group (Cycle 5)
- C4  POST   /workspaces/:id/delegations/:id/update → already in wsAuth group (Cycle 5)
- C5  GET    /workspaces/:id/delegations        → already in wsAuth group (Cycle 5)
- C7  GET    /workspaces/:id/memories           → already in wsAuth group (Cycle 5)
- C8  POST   /workspaces/:id/memories           → already in wsAuth group (Cycle 5)
- C9  POST   /workspaces/:id/delegate           → already in wsAuth group (Cycle 5)
- C10 GET    /admin/secrets                     → already in adminAuth group (Cycle 7)
- C11 POST+DELETE /admin/secrets                → already in adminAuth group (Cycle 7)

Tests (platform/internal/middleware/wsauth_middleware_test.go — 13 new):
WorkspaceAuth:
  - fail-open when workspace has no tokens (bootstrap path)
  - C4: no bearer on /delegations/:id/update → 401
  - C8: no bearer on /memories POST → 401
  - invalid bearer → 401
  - cross-workspace token replay → 401
  - valid bearer for correct workspace → 200

AdminAuth:
  - fail-open when no tokens exist globally (fresh install)
  - C10: no bearer on GET /admin/secrets → 401
  - C11: no bearer on POST /admin/secrets → 401
  - C11: no bearer on DELETE /admin/secrets/:key → 401
  - valid bearer → 200
  - invalid bearer → 401

Note: did NOT touch DELETE /admin/secrets in production — no destructive
calls to live secrets endpoints were made during this work.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-15 04:37:14 +00:00
Backend Engineer
96253ca8ca fix(security): C6 — extend SSRF blocklist to RFC-1918 private ranges
PR #94 only blocked 127.0.0.0/8 (loopback) and 169.254.0.0/16
(link-local/IMDS). An attacker could still register a workspace with
a URL in any RFC-1918 range (10.x, 172.16–31.x, 192.168.x) and
redirect A2A proxy traffic to internal services.

Block all five reserved ranges in validateAgentURL:
  - 169.254.0.0/16  link-local (IMDS: AWS/GCP/Azure)
  - 127.0.0.0/8     loopback (self-SSRF)
  - 10.0.0.0/8      RFC-1918
  - 172.16.0.0/12   RFC-1918 (includes Docker bridge networks)
  - 192.168.0.0/16  RFC-1918

Agents must use DNS hostnames, not IP literals. The provisioner
still writes 127.0.0.1 URLs via direct SQL UPDATE (CASE guard
preserves those); this blocklist only applies to the /registry/register
request body.

Tests: updated 3 previously-allowed RFC-1918 cases to expect rejection;
added 9 new cases covering range boundaries and the Docker bridge range.
All 22 validateAgentURL subtests pass.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-15 04:35:05 +00:00
rabbitblood
80a6fa6db5 fix(scheduler): heartbeat at tick start + per-fire so liveness reflects work-in-progress
The first scheduler heartbeat (#95) only fired AFTER each tick completed.
A tick that runs fireSchedule for 110+ seconds (long agent prompts) would
make /admin/liveness report scheduler as stale even though it was actively
working. Observed today: scheduler firing UIUX audit, last_tick_at lagged
by 95s+ and incrementing.

Three places now call Heartbeat:
1. Top of tick() — proves we're past the ticker.C wait
2. Inside each fire goroutine, before fireSchedule — ANY active fire
   keeps the heartbeat fresh
3. Inside each fire goroutine, after fireSchedule — captures the moment
   the per-fire work completes

(The post-tick Heartbeat in Start() is still there as the "all idle" case.)

Net result: /admin/liveness reports stale only if the scheduler genuinely
isn't doing anything for >2× pollInterval, which is the actual signal we
want.
2026-04-14 21:20:06 -07:00
rabbitblood
76a36e8062 fix(platform): panic-recovering supervisor for every background goroutine (#92)
Yesterday's scheduler-died incident (#85) was one instance of a systemic
bug: every long-running goroutine in the platform lacks panic recovery
and exposes no liveness signal. In a multi-tenant SaaS deployment, a
single tenant's bad data panicking any subsystem takes down the
subsystem for every tenant, silently, with all standard health probes
still green. That is a scale-of-one sev-1.

This PR:

1. Introduces `platform/internal/supervised/` with two primitives:

   a. RunWithRecover(ctx, name, fn) — runs fn in a recover wrapper.
      On panic logs the stack + exponential-backoff restart (1s → 2s →
      4s → … → 30s cap). On clean return (fn decided to stop) returns.
      On ctx.Done cancels cleanly.

   b. Heartbeat(name) + LastTick(name) + Snapshot() + IsHealthy(names,
      staleThreshold) — shared in-memory liveness registry. Every
      subsystem calls Heartbeat(name) at the end of each tick so
      operators can distinguish "goroutine alive and healthy" from
      "alive but stuck inside a single tick".

2. Wraps every `go X.Start(ctx)` in main.go:
   - broadcaster.Subscribe   (Redis pub/sub relay → WebSocket)
   - registry.StartLivenessMonitor
   - registry.StartHealthSweep
   - scheduler.Start         (the one that died yesterday)
   - channelMgr.Start        (Telegram / Slack)

3. Adds `supervised.Heartbeat("scheduler")` inside the scheduler tick
   loop as the first end-to-end demonstration. Follow-up PRs will add
   heartbeats to the other four subsystems.

4. Adds `GET /admin/liveness` endpoint returning per-subsystem
   last_tick_at + seconds_ago. Operators can poll this and alert on
   any subsystem whose seconds_ago exceeds 2x its cron/tick interval.

5. Unit tests for RunWithRecover (clean return no restart; panic
   restarts with backoff; ctx cancel stops restart loop) and for the
   liveness registry.

Net new code: ~160 lines + ~100 lines of tests. Refactor of main.go:
~10 line changes. No behavior change on happy path; only lifts what
happens on a panic.

Closes #92. Supersedes the local recover added to scheduler.go in
#90 (kept conceptually, but now via the shared helper).
2026-04-14 20:34:18 -07:00
Backend Engineer
602dcb6283 fix(security): C6 — block loopback IP literals in /registry/register
A workspace that self-registers with a 127.0.0.x URL on first INSERT
could redirect A2A proxy traffic back to the platform itself (SSRF).
The previous fix only blocked 169.254.0.0/16 (cloud metadata).

Add 127.0.0.0/8 to validateAgentURL's blocklist. RFC-1918 private
ranges (10.x, 172.16.x, 192.168.x) remain allowed — Docker container
networking depends on them.

Safe because the provisioner writes 127.0.0.1 URLs via direct SQL
UPDATE, not through /registry/register, so the UPSERT CASE that
preserves provisioner URLs is unaffected. Local-dev agents can still
register using "localhost" by name (hostname, not IP literal).

Tests: removed "valid localhost http" case (now correctly rejected),
added "valid localhost name" + three loopback-block assertions.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-15 03:34:14 +00:00
rabbitblood
ef7f482593 fix(scheduler): recover from panics + add liveness watchdog (#85)
The scheduler died silently on 2026-04-14 14:21 UTC and stayed dead for
12+ hours. Platform restart didn't recover it. Root cause: tick() and
fireSchedule() goroutines have no panic recovery. A single bad row, bad
cron expression, DB blip, or transient panic anywhere in the chain
permanently kills the scheduler goroutine — and the only signal to an
operator is "no crons firing", which is invisible if you're not watching.

Specifically:

  func (s *Scheduler) Start(ctx context.Context) {
      for {
          select {
          case <-ticker.C:
              s.tick(ctx)   // <- if this panics, the for-loop exits forever
          }
      }
  }

And inside tick:

  go func(s2 scheduleRow) {
      defer wg.Done()
      defer func() { <-sem }()
      s.fireSchedule(ctx, s2)   // <- panic here propagates up wg.Wait()
  }(sched)

Two `defer recover()` additions:

1. In Start's tick wrapper — a panic in tick() (DB scan, cron parse,
   row processing) is logged and the next tick fires normally.
2. In each fireSchedule goroutine — a single bad workspace can't take
   the rest of the batch down.

Plus a liveness watchdog:

- Scheduler now records `lastTickAt` after each successful tick.
- New methods `LastTickAt()` and `Healthy()` (true if last tick within
  2× pollInterval = 60s).
- Initialised at Start so Healthy() returns true on a fresh process.

Endpoint plumbing for /admin/scheduler/health is a follow-up — needs
threading the scheduler instance through router.Setup(). Documented
on #85.

Closes the silent-outage failure mode of #85. The other proposed
fixes (force-kill on /restart hang, active_tasks watchdog) are
separate concerns tracked in #85's comments.
2026-04-14 19:32:01 -07:00
Hongming Wang
7af4f10226 fix(middleware): tenant guard reads bare UUID from state= (no prefix)
Pair to molecule-controlplane PR #8. Fly's proxy returns 502 if the
fly-replay state value contains '=', so the control plane now puts the
bare UUID in state= (no 'org-id=' prefix). TenantGuard now treats the
whole 'state=...' value as the org id.
2026-04-14 18:09:44 -07:00
Hongming Wang
f1dd7cc367 fix(middleware): TenantGuard accepts org id via Fly-Replay-Src state
Phase B.3 pair-fix to the control plane's fly-replay state change.

Background: the private molecule-controlplane's router emits
`fly-replay: app=X;instance=Y;state=org-id=<uuid>`. Fly's edge replays
the request to the tenant and injects `Fly-Replay-Src: instance=Z;...;
state=org-id=<uuid>` on the replayed request. But response headers from
the cp (like X-Molecule-Org-Id) never travel to the replayed tenant —
only the state= param does.

TenantGuard now checks both paths in order:
  1. Primary: X-Molecule-Org-Id header (direct-access path, e.g. molecli)
  2. Secondary: Fly-Replay-Src's `state=org-id=<uuid>` segment
     (production fly-replay path)

Either matching configured MOLECULE_ORG_ID → allow. Neither matches →
404 (still don't leak tenant existence).

New helper orgIDFromReplaySrc parses the semicolon-separated Fly-Replay-
Src header per Fly's format. Covered by a table-driven test with 7 cases
including malformed + empty-header + wrong-state-key.

Tests: +3 new TestTenantGuard_* (FlyReplaySrc match, mismatch, table).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 17:54:13 -07:00
Hongming Wang
284ef6d33a feat(platform): TenantGuard middleware — public repo's only SaaS hook
Phase 32 foundation. The SaaS control plane (private molecule-controlplane
repo) provisions one platform instance per customer org on Fly Machines
and sets MOLECULE_ORG_ID=<uuid> on the machine. Its subdomain router
forwards requests with X-Molecule-Org-Id=<uuid>.

TenantGuard:
- When MOLECULE_ORG_ID is set → every non-allowlisted request must carry a
  matching X-Molecule-Org-Id header. Mismatched/missing header → 404 (not
  403 — don't leak tenant existence by letting probers distinguish "wrong
  org" from "route doesn't exist").
- When unset → passthrough. Self-hosted / dev / CI behavior unchanged.
- Allowlist is exact-match, not prefix — /health and /metrics only.

No orgs table, no signup, no billing, no Fly provisioning in this repo —
all that lives in the private control plane. The public repo's SaaS
surface is exactly this one middleware.

6 tests covering: unset-is-passthrough, matching header, mismatched
header 404 (with empty body), missing header 404, allowlist bypass, and
allowlist-is-exact-match.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 15:20:33 -07:00
Hongming Wang
3ddd0cffbf Merge pull request #76 from Molecule-AI/fix/issue-24-schedules-db-authoritative
fix(org): DB-authoritative schedules; org/import is additive on template rows (#24)
2026-04-14 14:40:54 -07:00
Hongming Wang
b15e30ccde fix(schedules): backfill legacy rows to 'template' + extract import SQL const
Addresses code-review warnings on PR #76:
- Migration 022 now backfills pre-existing workspace_schedules rows to
  source='template' before flipping NOT NULL + DEFAULT 'runtime'. Legacy
  rows (all seeded via org/import historically) stay refreshable on
  re-import. Down migration drops the CHECK constraint too.
- Extracted the import UPSERT into const orgImportScheduleSQL so the shape
  test asserts against the const directly instead of file-scraping org.go.
  Removed the os.ReadFile helper.
- scheduleResponse.Source gets json:\",omitempty\" so old clients that
  predate the migration don't see an empty string they can't explain.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 14:30:22 -07:00
Hongming Wang
c47898568c fix(org): use yaml.Marshal for category_routing + newline-guard block appends
Addresses code-review warnings on PR #75:
- renderCategoryRoutingYAML now builds yaml.Node + yaml.Marshal, escaping
  YAML-reserved chars in role names correctly (was JSON-as-YAML, fragile on
  unicode line separators).
- New appendYAMLBlock helper guarantees a newline boundary when concatenating
  YAML fragments into config.yaml (category_routing + initial_prompt both
  used to risk merging into the previous line).
- Fixed struct comment (replace-per-key, not UNION).
- Added TestCategoryRouting_EscapesYAMLSpecials and TestAppendYAMLBlock_NewlineGuard.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 14:28:22 -07:00
Hongming Wang
2e9fb51ff9 fix(org): DB-authoritative schedules; org/import is additive on template rows (#24)
Resolves #24 per CEO direction.

DB is source of truth for workspace_schedules. POST /org/import becomes
idempotent — only touches rows it owns (source='template'); runtime-added
schedules (Canvas / API) are preserved across re-imports.

- Migration 022: adds source TEXT NOT NULL DEFAULT 'runtime' CHECK in
  ('template','runtime'); unique index on (workspace_id, name) so the
  org/import upsert can use ON CONFLICT.
- org.go: schedule INSERT becomes
    INSERT ... 'template' ON CONFLICT (workspace_id, name) DO UPDATE
      SET ... WHERE workspace_schedules.source='template'.
  Never DELETEs.
- schedules.go: runtime POST writes 'runtime' explicitly; List handler
  surfaces the source field on the response so Canvas can render badges.
- 3 new unit tests assert source='runtime' default for runtime CRUD,
  the SQL shape contract for org/import (additive + idempotent +
  runtime-preserving + never-DELETE), and List response surface.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 14:09:44 -07:00
Hongming Wang
d4140ee244 feat(platform): generic category_routing replaces hardcoded audit dispatch (#51)
Add a category_routing block to org.yaml schema (defaults + per-workspace,
UNION semantics with per-key replace). The merged routing table is rendered
into each workspace's config.yaml at import time.

PM's system prompt loses the hardcoded security/ui/infra → role mapping
from PR #50; instead it reads category_routing from /configs/config.yaml
and delegates to whatever roles the org template lists for the incoming
audit-summary's category. Future org templates ship their own routing
without prompt churn.

Tests: 4 new TestCategoryRouting_* cases covering YAML parse, UNION+drop
semantics, deterministic config.yaml render, and empty-map handling.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 14:06:47 -07:00
Hongming Wang
eea64f06ec fix(org): per-workspace plugins UNION with defaults; '!' prefix opts out (#68)
Per-workspace `plugins:` now UNIONS with `defaults.plugins` instead of
replacing. A leading `!` or `-` on a per-workspace entry opts a default
out. Backward-compatible: re-listing defaults still dedupes to the same
list.

Refactored the inline REPLACE logic into a pure helper `mergePlugins`
in org.go so it's unit-testable. Five TestPlugins_* cases added.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 13:21:23 -07:00
Hongming Wang
3c7c65ffd3 Merge pull request #64 from Molecule-AI/fix/issue-15-refresh-oauth-on-restart
fix(secrets): auto-refresh global_secrets on workspace restart (#15)
2026-04-14 12:49:19 -07:00
Hongming Wang
a36047f3d8 feat(platform): inject restart context system message (#19 Layer 1)
After a workspace restart (HTTP /restart or programmatic RestartByID) and
re-registration, the platform sends a synthetic A2A message/send to the
workspace containing:
- restart timestamp
- previous session end timestamp + human duration
- env-var keys now available (keys only — never values)

The message is rendered in the format proposed in #19 and marked with
metadata.kind=restart_context so agents can detect and handle it
specifically if they choose.

Skip path: if the workspace doesn't re-register within 30s, log and drop.
The Restart HTTP response is unaffected by delivery success.

Layer 2 (user-defined restart_prompt via config.yaml / org.yaml) is
deferred — tracked as a separate follow-up issue.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 12:41:01 -07:00
Hongming Wang
1b432f6ffd fix(secrets): auto-restart workspaces on global secret change (#15)
Global secrets (e.g. CLAUDE_CODE_OAUTH_TOKEN) are injected as container env
vars at Start() time. Until now, rotating one only propagated to a workspace
on the next full restart-from-zero, which manual ops had to drive via a
`POST /workspaces/:id/restart` loop. Tier-3 Claude Code agents hit the
stale-token path first and surfaced as 401s inside the SDK.

Restart-time re-read of global_secrets + workspace_secrets was already
correct in `provisionWorkspaceOpts` — the missing piece was the trigger.
SetGlobal / DeleteGlobal now enqueue RestartByID for every non-paused,
non-removed, non-external workspace that does NOT shadow the key with a
workspace-level override. Matches the existing behaviour of workspace-scoped
`Set` / `Delete`.

Adds two sqlmock-backed tests exercising both branches.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 12:39:00 -07:00
Hongming Wang
7d4b9885cb Merge pull request #57 from Molecule-AI/fix/issue-12-preserve-claude-sessions
fix(provisioner): preserve Claude session directory across restart (#12)
2026-04-14 12:26:12 -07:00
Hongming Wang
34fb3fd471 feat(provisioner): configurable per-tier memory/CPU limits (#14)
Resolves #14. ApplyTierConfig now reads TIER{2,3,4}_MEMORY_MB and
TIER{2,3,4}_CPU_SHARES env vars, falling back to the compiled defaults
agreed in the issue:

  - T2: 512 MiB  / 1024 shares (1 CPU)  — unchanged baseline
  - T3: 2048 MiB / 2048 shares (2 CPU)  — new cap (previously uncapped)
  - T4: 4096 MiB / 4096 shares (4 CPU)  — new cap (previously uncapped)

CPU_SHARES follows Docker's 1024 = 1 CPU convention; internally the
value is translated to NanoCPUs for a hard allocation so behaviour
remains deterministic across hosts. Malformed or non-positive env
values silently fall back to the default.

Behaviour change note: T3 and T4 previously had no explicit cap.
Operators who relied on unlimited can set very large TIERn_MEMORY_MB /
TIERn_CPU_SHARES values; a follow-up can add unset-means-unlimited
semantics if required.

Tests:
  - TestGetTierMemoryMB_DefaultsMatchLegacy
  - TestGetTierMemoryMB_EnvOverride (covers malformed + zero fallback)
  - TestGetTierCPUShares_EnvOverride
  - TestApplyTierConfig_T3_UsesEnvOverride (wiring)
  - TestApplyTierConfig_T3_DefaultCap (documents the new cap)

Docs: .env.example section + CLAUDE.md platform env-vars list updated.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 10:49:37 -07:00
Hongming Wang
4ff65b82c7 fix(provisioner): preserve Claude session directory across restart (#12)
Resolves #12. The claude-code SDK stores conversations in
/root/.claude/sessions/ and Postgres tracks current_session_id, but the
container filesystem was recreated on every restart — next agent message
failed with "No conversation found with session ID: <uuid>".

Add a per-workspace named Docker volume (ws-<id>-claude-sessions) mounted
read-write at /root/.claude/sessions. Gated by runtime=claude-code so
other runtimes don't pay for a path they don't use. Volume is cleaned up
in RemoveVolume alongside the config volume.

Two opt-outs discard the volume before restart for a fresh session:
  - env WORKSPACE_RESET_SESSION=1 on the container
  - POST /workspaces/:id/restart?reset=true (or {"reset": true} body)

Plumbed via new ResetClaudeSession field on WorkspaceConfig +
provisionWorkspaceOpts helper so the flag stays request-scoped (not
persisted on CreateWorkspacePayload).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 10:45:30 -07:00
Hongming Wang
496dee8e13 feat(platform): GET /admin/workspaces/:id/test-token for E2E (#6)
Adds a gated admin endpoint that mints a fresh workspace bearer token on
demand, eliminating the register-race currently used by
test_comprehensive_e2e.sh (PR #5 follow-up).

- New handler admin_test_token.go: returns 404 unless MOLECULE_ENV != production
  or MOLECULE_ENABLE_TEST_TOKENS=1. Hides route existence in prod (404 not 403).
- Mints via wsauth.IssueToken; logs at INFO without the token itself.
- Verifies workspace exists before minting (missing -> 404, never 500).
- Tests cover prod-hidden, enable-flag-overrides-prod, missing workspace,
  and happy-path + token-validates round trip.
- tests/e2e/_lib.sh gains e2e_mint_test_token helper for downstream adoption.
- CLAUDE.md updated with route + env vars.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 09:35:26 -07:00
Hongming Wang
602f3ef685 fix(provisioner): stop rogue config-missing restart loop (#17)
Resolves #17.

Part A: scripts/cleanup-rogue-workspaces.sh deletes workspaces whose id
or name starts with known test placeholder prefixes (aaaaaaaa-, etc.)
and force-removes the paired Docker container. Documented in
tests/README.md.

Part B: add a pre-flight check in provisionWorkspace() — when neither a
template path nor in-memory configFiles supplies config.yaml, probe the
existing named volume via a throwaway alpine container. If the volume
lacks config.yaml, mark the workspace status='failed' with a clear
last_sample_error instead of handing it to Docker's unless-stopped
restart policy (which otherwise loops forever on FileNotFoundError).

New pure helper provisioner.ValidateConfigSource + unit tests.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-14 07:32:58 -07:00
Dev Lead Agent
85be574e4d fix(security): C18 register ownership check, C20 DELETE auth gate
C18 — Workspace URL hijacking (CRITICAL, CONFIRMED LIVE):
POST /registry/register now calls requireWorkspaceToken() before
persisting anything. If the workspace has any live auth tokens, the
caller must supply a valid Bearer token matching that workspace ID.
First registration (no tokens yet) passes through — token is issued
at end of this function (unchanged bootstrap contract). Mirrors the
same pattern already applied to /registry/heartbeat and
/registry/update-card. Attacker POC — overwriting Backend Engineer URL
to http://attacker.example.com:9999/steal — now returns 401.

C20 — Unauthenticated workspace deletion (CRITICAL, CONFIRMED LIVE):
DELETE /workspaces/:id moved from bare router into AdminAuth group.
Any valid workspace bearer token grants access (same fail-open
bootstrap contract as /settings/secrets). Mass-deletion attack chain
(C19 list → C20 delete all) requires auth for the DELETE step.
POST /workspaces (create) also moved to AdminAuth to prevent
unauthenticated workspace creation.

C19 (GET /workspaces topology exposure) deferred — canvas browser
has no bearer token; fix requires canvas service-token refactor.

Tests: 2 new registry tests — C18 bootstrap (no tokens, passes
through and issues token), C18 hijack blocked (has tokens, no
bearer → 401).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-14 07:38:53 +00:00
Dev Lead Agent
48ba0a1332 fix(security): block SSRF via registry URL validation (C6)
POST /registry/register accepted any URL string and persisted it as
the workspace's A2A endpoint — an attacker could register a workspace
with url=http://169.254.169.254/latest/meta-data/ and cause the platform
to proxy requests to the cloud metadata service when proxying A2A traffic.

Fix: validateAgentURL() helper rejects:
  - empty URL
  - non-http/https schemes (file://, ftp://, etc.)
  - 169.254.0.0/16 link-local IPs (AWS/GCP/Azure IMDS endpoints)
Allows RFC-1918 private ranges (Docker networking uses 172.16-31.x.x).

Adds 12 unit tests covering valid Docker-internal URLs and all SSRF vectors.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-14 06:37:37 +00:00
Dev Lead Agent
fec7ac82d3 fix(security): protect global secrets routes with AdminAuth middleware (Cycle 7)
Three unauthenticated routes allowed arbitrary read/write/delete of all
global platform secrets (API keys, provider credentials) with zero auth:
  - GET/PUT/POST /settings/secrets
  - DELETE /settings/secrets/:key
  - GET/POST/DELETE /admin/secrets (legacy aliases)

Fix: new AdminAuth middleware with same lazy-bootstrap contract as
WorkspaceAuth — fail-open when no tokens exist (fresh install / pre-Phase-30
upgrade), enforce once any workspace has a live token. Any valid workspace
bearer token grants access (platform-wide scope, no workspace binding needed).

Changes:
  wsauth/tokens.go         — HasAnyLiveTokenGlobal + ValidateAnyToken functions
  wsauth/tokens_test.go    — 5 new tests covering both new functions
  middleware/wsauth_middleware.go — AdminAuth middleware
  router/router.go         — global secrets routes now registered under adminAuth group

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-14 06:33:22 +00:00
Hongming Wang
2871409f3d Merge pull request #31 from Molecule-AI/fix/security-cycle5-auth
fix(security): Cycle 5+6 — workspace auth middleware blocks all 16 open criticals
2026-04-13 23:22:10 -07:00
Dev Lead Agent
6c78962a33 fix(security): Cycle 5 — auth middleware, injection hardening, skill sandbox
Fix A — platform/internal/middleware/wsauth_middleware.go (NEW):
  WorkspaceAuth() gin middleware enforces per-workspace bearer-token auth on
  ALL /workspaces/:id/* sub-routes. Same lazy-bootstrap contract as
  secrets.Values: workspaces with no live token are grandfathered through.
  Blocks C2, C3, C4, C5, C7, C8, C9, C12, C13 simultaneously.

Fix A — platform/internal/router/router.go:
  Reorganised route registration: bare CRUD (/workspaces, /workspaces/:id)
  and /a2a remain on root router; all other /workspaces/:id/* sub-routes
  moved into wsAuth = r.Group("/workspaces/:id", middleware.WorkspaceAuth(db.DB)).
  CORS AllowHeaders updated to include Authorization so browser/agent callers
  can send the bearer token cross-origin.

Fix B — workspace-template/heartbeat.py:
  _check_delegations(): validate source_id == self.workspace_id before
  accepting a delegation result. Attacker-crafted records with a foreign
  source_id are silently skipped with a WARNING log (injection attempt).
  trigger_msg no longer embeds raw response_preview text; references
  delegation_id + status only — removes the prompt-injection vector.

Fix C — workspace-template/skill_loader/loader.py:
  load_skill_tools(): before exec_module(), verify script is within
  scripts_dir (path traversal guard) and temporarily scrub sensitive env
  vars (CLAUDE_CODE_OAUTH_TOKEN, ANTHROPIC_API_KEY, OPENAI_API_KEY,
  WORKSPACE_AUTH_TOKEN, GITHUB_TOKEN, GH_TOKEN) from os.environ; restore
  in finally block. Defence-in-depth even if /plugins auth gate is bypassed.

Fix D — platform/internal/handlers/socket.go:
  HandleConnect(): agent connections (X-Workspace-ID present) validated via
  wsauth.HasAnyLiveToken + wsauth.ValidateToken before WebSocket upgrade.
  Canvas clients (no X-Workspace-ID) remain unauthenticated.

Fix D — workspace-template/events.py:
  PlatformEventSubscriber._connect(): include platform_auth bearer token in
  WebSocket upgrade headers alongside X-Workspace-ID.

Fix E — workspace-template/executor_helpers.py:
  recall_memories() and commit_memory() now pass platform_auth bearer token
  in Authorization header so WorkspaceAuth middleware allows access.

Fix F — workspace-template/a2a_client.py:
  send_a2a_message(): timeout=None → httpx.Timeout(connect=30, read=300,
  write=30, pool=30). Resolves H2 flagged across 5 consecutive audits.

Tests: 149/149 Python tests pass (test_heartbeat + test_events updated to
assert new source_id validation behaviour and allow Authorization header).

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
2026-04-14 04:44:42 +00:00
Hongming Wang
b773276ba5 refactor(platform): split 981-line plugins.go into per-domain modules
Pure mechanical split — no behavior changes. Groups the PluginsHandler
surface area by responsibility so each file stays focused and readable.

Before: plugins.go — 981 lines, 32 funcs
After:
  plugins.go                   — 194  (struct, constructor, shared helpers)
  plugins_sources.go           —  14  (ListSources)
  plugins_listing.go           — 174  (ListRegistry, ListInstalled,
                                       ListAvailableForWorkspace,
                                       CheckRuntimeCompatibility)
  plugins_install.go           — 276  (Install, Uninstall, Download handlers)
  plugins_install_pipeline.go  — 368  (resolveAndStage, deliverToContainer,
                                       copy/stream tar, CLAUDE.md marker
                                       stripping, dirSize, httpErr,
                                       installRequest/stageResult,
                                       install-layer consts + envx caps)

plugins_test.go (1365 lines) untouched — tests pass unchanged.
go build, go vet, and go test -race ./internal/handlers/... all clean.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 18:01:59 -07:00
Hongming Wang
d751420679 test: 100% coverage of extracted helpers + ConfirmDialog singleButton
Follow-up to the quality-fixes-pass2 code review.

## Go: direct unit tests for PR #5 extracted helpers (~47 new tests)

a2a_proxy_test.go:
- resolveAgentURL: cache hit, cache-miss DB hit, not-found, null-URL,
  docker-rewrite guard
- dispatchA2A: build error, canvas timeout, agent timeout, success
- handleA2ADispatchError: context deadline, generic error, build error
- maybeMarkContainerDead: nil-provisioner, runtime=external short-circuits
- logA2AFailure, logA2ASuccess: activity_logs row content + status

delegation_test.go:
- bindDelegateRequest: valid / malformed / bad-UUID
- lookupIdempotentDelegation: no-key / no-match / failed-row-deleted / existing-pending
- insertDelegationRow: insertOK / insertHandledByIdempotent /
  insertTrackingUnavailable
- insertDelegationOutcome: zero-value is insertOutcomeUnknown sentinel

discovery_test.go:
- discoverWorkspacePeer: online / not-found / access-denied + 2 edges
- writeExternalWorkspaceURL: 3 cases
- discoverHostPeer: smoke test documents the unreachable-by-design path

activity_test.go:
- parseSessionSearchParams: defaults + custom limit/offset/q
- buildSessionSearchQuery: no-filters + with-query shapes
- scanSessionSearchRows: empty / single / multiple rows

Package coverage: 56.1% → 57.6%. Every helper extracted in PR #5 is
now at or near 100% line coverage (see PR notes for the 4 remaining
gaps, all blocked on provisioner interface mockability).

## Defensive enum zero-value fix

insertDelegationOutcome now starts with insertOutcomeUnknown=0 as a
sentinel so an un-initialized variable can't silently read as
"success". insertOK, insertHandledByIdempotent, insertTrackingUnavailable
shift to 1/2/3. No caller changes needed.

## Canvas: ConfirmDialog.singleButton test (5 cases)

canvas/src/components/__tests__/ConfirmDialog.test.tsx covers:
- default render (both buttons)
- singleButton hides Cancel
- singleButton: Escape still fires onCancel
- singleButton: backdrop-click still fires onCancel
- singleButton: onConfirm fires on click

vitest total: 352 → 357, all passing.

## Docstring clarity

ConfirmDialog.tsx: expanded singleButton prop comment to explicitly
instruct callers to pass the same handler for onConfirm/onCancel when
using it as an info toast (matches TemplatePalette usage).

## ErrorBoundary clipboard observability

.catch(() => {}) silently swallowed rejections. Now:
.catch((e) => console.warn("clipboard write failed:", e))
so permission-denied / insecure-context failures surface in the console.

## Verification

- go build ./... clean
- go vet ./... clean
- go test -race ./internal/... — all pass
- canvas npm run build — clean
- canvas npm test -- --run — 357/357 pass
- tests/e2e/test_api.sh — 46/62 pass; all 16 failures are pre-existing
  (token-auth enforcement + stale test workspaces + missing Docker
  network). None involve handlers touched in PR #5.
- Manual: platform + canvas running locally, title=Molecule AI,
  /workspaces returns [], /health returns ok. Identified + killed a
  stale Next.js server from the old Starfire-AgentTeam repo that was
  serving the old brand on IPv4 port 3000.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 17:08:33 -07:00
Hongming Wang
232766d0da chore: address follow-up code review — named enum, singleButton, tests
Post-review fixes on top of the quality-pass-2 branch.

1. delegation.go: replaced insertDelegationRow's (bool, bool) return
   with a typed insertDelegationOutcome enum (insertOK /
   insertHandledByIdempotent / insertTrackingUnavailable). Eliminates
   the positional-boolean decoding the caller had to do. Internal, no
   behavior change.

2. ConfirmDialog.tsx: added singleButton prop. When true, hides the
   Cancel button for single-action info toasts (Esc still dismisses
   via onCancel). TemplatePalette's import notice uses it.

3. ErrorBoundary.tsx: fixed the floating clipboard promise. Added
   .catch(() => {}) so a rejected writeText (permission denied,
   insecure context) doesn't surface as unhandled rejection.

4. a2a_proxy_test.go: added 5 direct unit tests for
   normalizeA2APayload (invalid JSON, wraps-bare, preserves-existing-
   id, preserves-existing-messageId, missing-method). Fills the unit-
   test gap for the helper extracted in the last pass.

Verification:
- go test -race ./internal/handlers/... passes (incl. 5 new tests)
- go build ./... clean
- canvas npm run build clean
- canvas npm test -- --run -> 352/352

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 14:45:05 -07:00
Hongming Wang
789f568bef chore: quality pass — native dialogs, env sync, Go handler splits
Three parallel cleanups driven by the second code-review pass.

## Native dialogs → ConfirmDialog (7 sites)

Violated the standing feedback_no_native_dialogs rule.

- ChannelsTab: confirm() → ConfirmDialog danger variant with pendingDelete state
- ScheduleTab: window.confirm() → ConfirmDialog danger
- ChatTab: confirm("Restart...") → ConfirmDialog warning (restart is recoverable)
- TemplatePalette: two alert() sites collapsed into a single notice state +
  ConfirmDialog as OK-only info toast
- ErrorBoundary: dropped both window.alert calls entirely. Clipboard-copy
  click is self-evident; console.error already captures the fallback.

## .env.example ↔ Go env var sync

Added 11 previously-undocumented env vars grouped into 6 new sections:

- Platform: PLATFORM_URL, MOLECULE_URL, WORKSPACE_DIR, MOLECULE_ENV
- CORS / rate limiting: CORS_ORIGINS, RATE_LIMIT
- Activity retention: ACTIVITY_RETENTION_DAYS, ACTIVITY_CLEANUP_INTERVAL_HOURS
- Container detection: MOLECULE_IN_DOCKER (moved to dedup)
- Observability: AWARENESS_URL
- Webhooks: GITHUB_WEBHOOK_SECRET
- CLI: MOLECLI_URL

All 21 distinct os.Getenv / envx.* keys (excluding HOME) now documented.
Zero orphans in the other direction.

## Go handler function splits (4 funcs, pure refactor)

No behavior change; same tests pass.

| Function                  | Before | After | Helpers                                                       |
|---------------------------|-------:|------:|---------------------------------------------------------------|
| proxyA2ARequest           |    257 |    56 | resolveAgentURL, normalizeA2APayload, dispatchA2A,            |
|                           |        |       | handleA2ADispatchError, maybeMarkContainerDead,               |
|                           |        |       | logA2AFailure, logA2ASuccess                                  |
| Delegate                  |    127 |    60 | bindDelegateRequest, lookupIdempotentDelegation,              |
|                           |        |       | insertDelegationRow                                           |
| Discover                  |    125 |    40 | discoverWorkspacePeer, writeExternalWorkspaceURL,             |
|                           |        |       | discoverHostPeer                                              |
| SessionSearch             |    109 |    24 | parseSessionSearchParams, buildSessionSearchQuery,            |
|                           |        |       | scanSessionSearchRows                                         |

Preserved exact error semantics, log.Printf calls, status codes, and
response shapes. Introduced a proxyDispatchBuildError sentinel in
a2a_proxy so the orchestrator can distinguish "couldn't build the
request" from "Do() failed" without changing existing branches.

## Verification

- go build ./... clean
- go vet ./... clean
- go test -race ./internal/... — all pass
- canvas npm run build — clean
- canvas npm test -- --run — 352/352 pass
- grep window.confirm|window.alert|window.prompt in canvas/src — 0 matches
- every platform os.Getenv key present in .env.example

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 14:36:30 -07:00
Hongming Wang
dae07d61fd chore: structural cleanup — dead dirs, moves, gitignore
- Delete empty platform/plugins/ (dead remnant; plugins/ at repo root is
  the real registry; router.go comment updated)
- Gitignore local dev cruft: platform/workspace-configs-templates/,
  .agents/ (codex/gemini skill cache), backups/
- Untrack .agents/skills/ (keep local, stop tracking)
- Move examples/remote-agent/ → sdk/python/examples/remote-agent/
  (co-locate with the SDK it exercises); update refs in
  molecule_agent README + __init__ + PLAN.md + the demo's own README
- Move docs/superpowers/plans/ → plugins/superpowers/plans/
  (plans were written by the superpowers plugin's writing-plans
  subskill; belong with the plugin, not under docs)
- Add tests/README.md explaining the unit-tests-per-package +
  root-E2E split so new contributors don't ask
- Add docs/README.md explaining why site tooling lives under docs/
  rather than a separate docs-site/ (VitePress ergonomics)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 14:06:52 -07:00
Hongming Wang
24fec62d7f initial commit — Molecule AI platform
Forked clean from public hackathon repo (Starfire-AgentTeam, BSL 1.1)
with full rebrand to Molecule AI under github.com/Molecule-AI/molecule-monorepo.

Brand: Starfire → Molecule AI.
Slug: starfire / agent-molecule → molecule.
Env vars: STARFIRE_* → MOLECULE_*.
Go module: github.com/agent-molecule/platform → github.com/Molecule-AI/molecule-monorepo/platform.
Python packages: starfire_plugin → molecule_plugin, starfire_agent → molecule_agent.
DB: agentmolecule → molecule.

History truncated; see public repo for prior commits and contributor
attribution. Verified green: go test -race ./... (platform), pytest
(workspace-template 1129 + sdk 132), vitest (canvas 352), build (mcp).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-13 11:55:37 -07:00